Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18274 | 3' | -55.7 | NC_004681.1 | + | 1419 | 0.66 | 0.802644 |
Target: 5'- uUGAGGCaGCCcuUGucggcgaGGUCGUCGGCCAg -3' miRNA: 3'- gGCUCUGgUGGu-AC-------CCAGUAGUCGGU- -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 35161 | 0.66 | 0.784644 |
Target: 5'- aCCGAGccuGCCACUGUGGuugccGUCcgCGGCgAg -3' miRNA: 3'- -GGCUC---UGGUGGUACC-----CAGuaGUCGgU- -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 16636 | 0.66 | 0.784644 |
Target: 5'- aCCacGGCCGCCGUGGGgacCGUUgccGCCAc -3' miRNA: 3'- -GGcuCUGGUGGUACCCa--GUAGu--CGGU- -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 6908 | 0.66 | 0.784643 |
Target: 5'- uCCGuGGCCACCAccgUGGGcUCGUU--CCAc -3' miRNA: 3'- -GGCuCUGGUGGU---ACCC-AGUAGucGGU- -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 17580 | 0.66 | 0.765113 |
Target: 5'- uCCGAGGCCGcCCAUGccaGG-CAcgaAGCCAu -3' miRNA: 3'- -GGCUCUGGU-GGUAC---CCaGUag-UCGGU- -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 67121 | 0.66 | 0.765113 |
Target: 5'- aUGAGACCACCAcGGG-CGgaaaGGCUu -3' miRNA: 3'- gGCUCUGGUGGUaCCCaGUag--UCGGu -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 44133 | 0.67 | 0.745065 |
Target: 5'- cCCGAGGCCGCgGgccUGGcccUCAcCGGCCGc -3' miRNA: 3'- -GGCUCUGGUGgU---ACCc--AGUaGUCGGU- -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 39346 | 0.67 | 0.734874 |
Target: 5'- uCCGAGggGCCGCUGUGG---AUCGGCCu -3' miRNA: 3'- -GGCUC--UGGUGGUACCcagUAGUCGGu -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 33535 | 0.67 | 0.724585 |
Target: 5'- aUCGAGACCGUCAaGGGUCuGUUGGCg- -3' miRNA: 3'- -GGCUCUGGUGGUaCCCAG-UAGUCGgu -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 64036 | 0.67 | 0.724585 |
Target: 5'- cCCGGGACCACUG-GGGaUAUCGagcGCCc -3' miRNA: 3'- -GGCUCUGGUGGUaCCCaGUAGU---CGGu -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 16615 | 0.68 | 0.693238 |
Target: 5'- aCUGcAGGCCGCgAUGGaGgcggcgggCAUCAGCCc -3' miRNA: 3'- -GGC-UCUGGUGgUACC-Ca-------GUAGUCGGu -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 21635 | 0.68 | 0.682664 |
Target: 5'- gUGAGGCCACCGcgcGGGUgGUCAacgaauagcGCCc -3' miRNA: 3'- gGCUCUGGUGGUa--CCCAgUAGU---------CGGu -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 23549 | 0.68 | 0.682663 |
Target: 5'- cCCGGcACCACCGucucUGGcacaguguUCGUCAGCCAc -3' miRNA: 3'- -GGCUcUGGUGGU----ACCc-------AGUAGUCGGU- -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 42086 | 0.68 | 0.672044 |
Target: 5'- gCCGAGAUCGCCcccgcGUaGGUCAggUCAGCg- -3' miRNA: 3'- -GGCUCUGGUGG-----UAcCCAGU--AGUCGgu -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 17950 | 0.68 | 0.661388 |
Target: 5'- gCCGAGGgCGgcuCCGUGGGcCAccgCAGCCc -3' miRNA: 3'- -GGCUCUgGU---GGUACCCaGUa--GUCGGu -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 21225 | 0.69 | 0.597241 |
Target: 5'- -gGGGACCACCAcaaUGGGcgUCAUgAGCg- -3' miRNA: 3'- ggCUCUGGUGGU---ACCC--AGUAgUCGgu -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 48459 | 0.7 | 0.575991 |
Target: 5'- aCCGAaGCCuuuCCGcUGGGUCAuUCAGCgCAu -3' miRNA: 3'- -GGCUcUGGu--GGU-ACCCAGU-AGUCG-GU- -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 58231 | 0.7 | 0.575991 |
Target: 5'- gCCGGGggacuACCGCCAUGGaGUCuUCgcuGGCCu -3' miRNA: 3'- -GGCUC-----UGGUGGUACC-CAGuAG---UCGGu -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 54542 | 0.7 | 0.565428 |
Target: 5'- aCCGcAGAgcccuucaucauCCGCCcgGUGGGaacCAUCAGCCAg -3' miRNA: 3'- -GGC-UCU------------GGUGG--UACCCa--GUAGUCGGU- -5' |
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18274 | 3' | -55.7 | NC_004681.1 | + | 49325 | 0.71 | 0.513514 |
Target: 5'- gCCGGuGACCAagacgaCGcGGGUCAcuUCAGCCGu -3' miRNA: 3'- -GGCU-CUGGUg-----GUaCCCAGU--AGUCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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