Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18275 | 5' | -59.3 | NC_004681.1 | + | 19745 | 0.66 | 0.621806 |
Target: 5'- cGGauGCCGcUGCCGucccaggcuugcCCACCCucGCCGUCa- -3' miRNA: 3'- -CC--UGGCaACGGC------------GGUGGG--CGGUAGac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 13011 | 0.66 | 0.618673 |
Target: 5'- cGGACgaCGUgGCCGCgACugacacugucaucgCCGCCAUCg- -3' miRNA: 3'- -CCUG--GCAaCGGCGgUG--------------GGCGGUAGac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 24952 | 0.66 | 0.611369 |
Target: 5'- gGGAgCCuuggcgGCCGCCGCCCGCgCcgCc- -3' miRNA: 3'- -CCU-GGcaa---CGGCGGUGGGCG-GuaGac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 37497 | 0.66 | 0.611369 |
Target: 5'- uGACCGUcGCCGCCAagaaggCCGCgggCAUCc- -3' miRNA: 3'- cCUGGCAaCGGCGGUg-----GGCG---GUAGac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 53713 | 0.66 | 0.611369 |
Target: 5'- uGACCGUcGCCGaCCuCgUCGCCAUCc- -3' miRNA: 3'- cCUGGCAaCGGC-GGuG-GGCGGUAGac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 8515 | 0.66 | 0.600949 |
Target: 5'- cGGACgGUgagaCCGCC-CCCgcgGCCAUCg- -3' miRNA: 3'- -CCUGgCAac--GGCGGuGGG---CGGUAGac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 14763 | 0.66 | 0.590552 |
Target: 5'- cGGuuuCCGUgacGCCGCggaCGCCCugGCCAUcCUGa -3' miRNA: 3'- -CCu--GGCAa--CGGCG---GUGGG--CGGUA-GAC- -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 48697 | 0.66 | 0.590552 |
Target: 5'- uGGGCCGaguucgGCUucgaGUCGCCCGCgGUCa- -3' miRNA: 3'- -CCUGGCaa----CGG----CGGUGGGCGgUAGac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 19741 | 0.67 | 0.559581 |
Target: 5'- aGGCCGUUGCUGaUCGcCCCGCUGUg-- -3' miRNA: 3'- cCUGGCAACGGC-GGU-GGGCGGUAgac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 12080 | 0.67 | 0.559581 |
Target: 5'- aGGCCGaguacgugGCCGagguCCGCCCGCgCGUCUc -3' miRNA: 3'- cCUGGCaa------CGGC----GGUGGGCG-GUAGAc -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 63054 | 0.67 | 0.549353 |
Target: 5'- -cGCCGccGCCGCCACCacCGCCGa--- -3' miRNA: 3'- ccUGGCaaCGGCGGUGG--GCGGUagac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 27735 | 0.67 | 0.549353 |
Target: 5'- uGGAUCGgcgaccagaGCCGCCGCcgCCGCCAg--- -3' miRNA: 3'- -CCUGGCaa-------CGGCGGUG--GGCGGUagac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 57600 | 0.67 | 0.529079 |
Target: 5'- gGGaACCGUccGCCGCCuacagucccUCCGCCGaCUGg -3' miRNA: 3'- -CC-UGGCAa-CGGCGGu--------GGGCGGUaGAC- -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 27987 | 0.67 | 0.529079 |
Target: 5'- uGGACgaGUUGgUGCCGCCCgaGCCAUg-- -3' miRNA: 3'- -CCUGg-CAACgGCGGUGGG--CGGUAgac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 20671 | 0.67 | 0.529079 |
Target: 5'- cGGAUUGaUUuCCGCCAgCgCCGCCAUUUGu -3' miRNA: 3'- -CCUGGC-AAcGGCGGU-G-GGCGGUAGAC- -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 23598 | 0.67 | 0.519045 |
Target: 5'- aGGGCaCGgggGUgGCCAUCCGCCuccucCUGg -3' miRNA: 3'- -CCUG-GCaa-CGgCGGUGGGCGGua---GAC- -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 10033 | 0.68 | 0.499211 |
Target: 5'- aGGGCCGUUGCaGCauCAUCCG-CAUCUu -3' miRNA: 3'- -CCUGGCAACGgCG--GUGGGCgGUAGAc -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 17997 | 0.68 | 0.489421 |
Target: 5'- cGGACCcucgccGCCGCCGCCCaggaauuCCuUCUGg -3' miRNA: 3'- -CCUGGcaa---CGGCGGUGGGc------GGuAGAC- -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 28093 | 0.68 | 0.479721 |
Target: 5'- aGGACUacUGCCGCCGuugCCGCCGUUg- -3' miRNA: 3'- -CCUGGcaACGGCGGUg--GGCGGUAGac -5' |
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18275 | 5' | -59.3 | NC_004681.1 | + | 25168 | 0.68 | 0.479721 |
Target: 5'- aGGCUGagcgaggUGCCGcCCGCgCCGCCcUCUGc -3' miRNA: 3'- cCUGGCa------ACGGC-GGUG-GGCGGuAGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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