Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18276 | 5' | -55.7 | NC_004681.1 | + | 14466 | 0.66 | 0.748525 |
Target: 5'- cGCCGcGCGcGCCgccuccGCCGAGCAGGGc-- -3' miRNA: 3'- -UGGUuCGUcCGG------CGGCUUGUCCUaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 39414 | 0.66 | 0.738126 |
Target: 5'- uCCAGcGCGGcGCCGCgCGcGCAGGuAUUUg -3' miRNA: 3'- uGGUU-CGUC-CGGCG-GCuUGUCC-UAAA- -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 50991 | 0.66 | 0.738126 |
Target: 5'- uCCGacucgaguauuGGCAGGCCGCCugcuuguCGGGGUa- -3' miRNA: 3'- uGGU-----------UCGUCCGGCGGcuu----GUCCUAaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 46541 | 0.66 | 0.723391 |
Target: 5'- uACCgGAGCAGGCCGCgGGAaccugcgcgguuGGGUg- -3' miRNA: 3'- -UGG-UUCGUCCGGCGgCUUgu----------CCUAaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 70948 | 0.66 | 0.715955 |
Target: 5'- gGCUgAGGCAugcucgcGGCCGCUGAGCGuGGAg-- -3' miRNA: 3'- -UGG-UUCGU-------CCGGCGGCUUGU-CCUaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 5283 | 0.66 | 0.706337 |
Target: 5'- gGCCAuGGCGGG-CG-CGGACAGGGUc- -3' miRNA: 3'- -UGGU-UCGUCCgGCgGCUUGUCCUAaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 14411 | 0.66 | 0.706337 |
Target: 5'- aGCgCAAGCAGGCgGCCGA--GGcGAa-- -3' miRNA: 3'- -UG-GUUCGUCCGgCGGCUugUC-CUaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 17385 | 0.66 | 0.695582 |
Target: 5'- cGCC-AGCAGGgCGUCGucucCGGGAUa- -3' miRNA: 3'- -UGGuUCGUCCgGCGGCuu--GUCCUAaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 49895 | 0.67 | 0.680424 |
Target: 5'- uACCAGGCAGGCaagcacuacucaCCGAAgAGGGa-- -3' miRNA: 3'- -UGGUUCGUCCGgc----------GGCUUgUCCUaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 45572 | 0.67 | 0.673899 |
Target: 5'- gAUCAGGguGGCCaGCuCGGAguGGAc-- -3' miRNA: 3'- -UGGUUCguCCGG-CG-GCUUguCCUaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 14892 | 0.67 | 0.662994 |
Target: 5'- cGCCucGCAGGUCGCCGAcgucgccucGCAGu---- -3' miRNA: 3'- -UGGuuCGUCCGGCGGCU---------UGUCcuaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 65008 | 0.67 | 0.652061 |
Target: 5'- uCCAGGCGGG-CGCC--GCGGGAg-- -3' miRNA: 3'- uGGUUCGUCCgGCGGcuUGUCCUaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 3007 | 0.67 | 0.637821 |
Target: 5'- cGCCcAGcCAGGCCcccaggauguagggGUCGAGCGGGAg-- -3' miRNA: 3'- -UGGuUC-GUCCGG--------------CGGCUUGUCCUaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 54498 | 0.68 | 0.608243 |
Target: 5'- -gCAAGCAGGCCaagaGCUGGuccCAGGAUc- -3' miRNA: 3'- ugGUUCGUCCGG----CGGCUu--GUCCUAaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 4122 | 0.68 | 0.597317 |
Target: 5'- uGCgCAAGCAGGCCGCUGAGg------- -3' miRNA: 3'- -UG-GUUCGUCCGGCGGCUUguccuaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 65977 | 0.68 | 0.586419 |
Target: 5'- gGCCGAGaAGGCUGCCGcGCAGa---- -3' miRNA: 3'- -UGGUUCgUCCGGCGGCuUGUCcuaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 65323 | 0.68 | 0.586419 |
Target: 5'- ---cGGCAGGCCGCUGu-CGGGGUc- -3' miRNA: 3'- ugguUCGUCCGGCGGCuuGUCCUAaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 58752 | 0.68 | 0.586419 |
Target: 5'- gGCCcgcggcGCAGGCgGCCGuggcGCAGGAc-- -3' miRNA: 3'- -UGGuu----CGUCCGgCGGCu---UGUCCUaaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 16333 | 0.68 | 0.57556 |
Target: 5'- aGCCGAGCAGGCCaucuCCGcuGCGGcGGUg- -3' miRNA: 3'- -UGGUUCGUCCGGc---GGCu-UGUC-CUAaa -5' |
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18276 | 5' | -55.7 | NC_004681.1 | + | 51461 | 0.69 | 0.564747 |
Target: 5'- aGCCAGGCAGcGUCGCCucaucGAACuGGGc-- -3' miRNA: 3'- -UGGUUCGUC-CGGCGG-----CUUGuCCUaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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