miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18278 5' -54.2 NC_004681.1 + 67117 0.66 0.880778
Target:  5'- uGCCAgUGAGCUugcgCAUGGCCUGcGa--- -3'
miRNA:   3'- -CGGUgGCUUGAa---GUACCGGGC-Caacc -5'
18278 5' -54.2 NC_004681.1 + 17635 0.66 0.873252
Target:  5'- uGCCGCCaGGGag-CGUGGCCUGcaugUGGc -3'
miRNA:   3'- -CGGUGG-CUUgaaGUACCGGGCca--ACC- -5'
18278 5' -54.2 NC_004681.1 + 60000 0.66 0.873252
Target:  5'- uGCCugCGggUccUCAa-GCCCGGU-GGg -3'
miRNA:   3'- -CGGugGCuuGa-AGUacCGGGCCAaCC- -5'
18278 5' -54.2 NC_004681.1 + 38375 0.66 0.865489
Target:  5'- cGCCaagugacguACCGccUUUCGUGaGCCCGGagGGu -3'
miRNA:   3'- -CGG---------UGGCuuGAAGUAC-CGGGCCaaCC- -5'
18278 5' -54.2 NC_004681.1 + 66842 0.66 0.857494
Target:  5'- uGCCACCGGcCUUCugcgcauUGGCCaccgcgUGGa -3'
miRNA:   3'- -CGGUGGCUuGAAGu------ACCGGgcca--ACC- -5'
18278 5' -54.2 NC_004681.1 + 62479 0.66 0.857494
Target:  5'- cCCACgguggucuaCGAACUccugaUCAUGGCCCaGGccaUGGg -3'
miRNA:   3'- cGGUG---------GCUUGA-----AGUACCGGG-CCa--ACC- -5'
18278 5' -54.2 NC_004681.1 + 38918 0.67 0.814311
Target:  5'- uGCCGCCGua------GGCCCGGaUGGu -3'
miRNA:   3'- -CGGUGGCuugaaguaCCGGGCCaACC- -5'
18278 5' -54.2 NC_004681.1 + 64783 0.67 0.814311
Target:  5'- gGCCugCGAugUaugUCA-GGCCCaGcUUGGc -3'
miRNA:   3'- -CGGugGCUugA---AGUaCCGGGcC-AACC- -5'
18278 5' -54.2 NC_004681.1 + 25338 0.67 0.814311
Target:  5'- cGCCGCCGcgGGCgcCAUGGCCgCcGUUGu -3'
miRNA:   3'- -CGGUGGC--UUGaaGUACCGG-GcCAACc -5'
18278 5' -54.2 NC_004681.1 + 13376 0.67 0.805092
Target:  5'- cGCCcUCGGACUcgAUGGCCUGGacgcGGa -3'
miRNA:   3'- -CGGuGGCUUGAagUACCGGGCCaa--CC- -5'
18278 5' -54.2 NC_004681.1 + 42243 0.68 0.776438
Target:  5'- gGCCGCCGAGCUgc-UGGuCCCGcccgcGGa -3'
miRNA:   3'- -CGGUGGCUUGAaguACC-GGGCcaa--CC- -5'
18278 5' -54.2 NC_004681.1 + 58660 0.68 0.756607
Target:  5'- -gCAUCGAGCUUgAcgcUGGCCCaGGUcuccUGGg -3'
miRNA:   3'- cgGUGGCUUGAAgU---ACCGGG-CCA----ACC- -5'
18278 5' -54.2 NC_004681.1 + 52952 0.68 0.746504
Target:  5'- cGUCACCGA----CGUGGCCUGGcaGGc -3'
miRNA:   3'- -CGGUGGCUugaaGUACCGGGCCaaCC- -5'
18278 5' -54.2 NC_004681.1 + 9884 0.69 0.736291
Target:  5'- aCCAgCUuGGCUUCA--GCCCGGUUGGc -3'
miRNA:   3'- cGGU-GGcUUGAAGUacCGGGCCAACC- -5'
18278 5' -54.2 NC_004681.1 + 56255 0.69 0.736291
Target:  5'- gGCCGCgGAGCUUCAUcGCCuugaugCGGcggUGGu -3'
miRNA:   3'- -CGGUGgCUUGAAGUAcCGG------GCCa--ACC- -5'
18278 5' -54.2 NC_004681.1 + 53163 0.69 0.725978
Target:  5'- gGCCA-CGGACUuccUCAUGGCCgCGacaUUGGa -3'
miRNA:   3'- -CGGUgGCUUGA---AGUACCGG-GCc--AACC- -5'
18278 5' -54.2 NC_004681.1 + 42177 0.69 0.725978
Target:  5'- gGCC-CCGAACagucuggCGUaGGCCaGGUUGGc -3'
miRNA:   3'- -CGGuGGCUUGaa-----GUA-CCGGgCCAACC- -5'
18278 5' -54.2 NC_004681.1 + 17462 0.69 0.725978
Target:  5'- gGCuCACCGAucaugGCUUCGU-GCCUGGcaUGGg -3'
miRNA:   3'- -CG-GUGGCU-----UGAAGUAcCGGGCCa-ACC- -5'
18278 5' -54.2 NC_004681.1 + 12232 0.7 0.6626
Target:  5'- gGCCcguuCUGGGCUgagUCggGUGGCCCGGUgcugUGGc -3'
miRNA:   3'- -CGGu---GGCUUGA---AG--UACCGGGCCA----ACC- -5'
18278 5' -54.2 NC_004681.1 + 69143 0.71 0.566289
Target:  5'- aGCCAUCGGugUcgCAggugcGGCCCGGUgucaGGu -3'
miRNA:   3'- -CGGUGGCUugAa-GUa----CCGGGCCAa---CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.