miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18280 3' -58.6 NC_004681.1 + 2934 0.7 0.387269
Target:  5'- gGUgACCGUGUAGCG-GCGGUccccGCgGGCu -3'
miRNA:   3'- -CAgUGGCGCGUCGUgCGCCA----UGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 12504 0.7 0.403869
Target:  5'- cGUCACCggcucaccgacgaGCGUcGC-CGCGGUGgUGGUg -3'
miRNA:   3'- -CAGUGG-------------CGCGuCGuGCGCCAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 13136 0.69 0.42273
Target:  5'- -cCACCGCccuucGUGGCACgGCgGGUACgGGCg -3'
miRNA:   3'- caGUGGCG-----CGUCGUG-CG-CCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 61857 0.69 0.42273
Target:  5'- --gGCCGaugGCGGC-CGCGGU-CUGGUg -3'
miRNA:   3'- cagUGGCg--CGUCGuGCGCCAuGACCG- -5'
18280 3' -58.6 NC_004681.1 + 63525 0.69 0.42273
Target:  5'- -aCAUCG-GCAaGCGCGCGGUAaUGGUu -3'
miRNA:   3'- caGUGGCgCGU-CGUGCGCCAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 10846 0.69 0.42273
Target:  5'- -cCGCCGCGauuGCGaccucuccCGCGGUucacGCUGGCc -3'
miRNA:   3'- caGUGGCGCgu-CGU--------GCGCCA----UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 5325 0.69 0.42273
Target:  5'- aGUCAUUGCcaAGCGCGCacaGGcGCUGGCa -3'
miRNA:   3'- -CAGUGGCGcgUCGUGCG---CCaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 29190 0.69 0.423641
Target:  5'- cGUUACCGCGCcguuaauccuguuauGCGCGUGGU--UGGUc -3'
miRNA:   3'- -CAGUGGCGCGu--------------CGUGCGCCAugACCG- -5'
18280 3' -58.6 NC_004681.1 + 64936 0.69 0.431896
Target:  5'- gGUCGCgGCGCAGguaccaguccCACGgGGUGCccucggaGGCg -3'
miRNA:   3'- -CAGUGgCGCGUC----------GUGCgCCAUGa------CCG- -5'
18280 3' -58.6 NC_004681.1 + 48653 0.69 0.450569
Target:  5'- -aCACCGCcucCAcGCugGCGGgaaccCUGGCg -3'
miRNA:   3'- caGUGGCGc--GU-CGugCGCCau---GACCG- -5'
18280 3' -58.6 NC_004681.1 + 67051 0.69 0.46007
Target:  5'- uGUCGCCuucgaGCuCGGCGCGCGGcACcagGGCc -3'
miRNA:   3'- -CAGUGG-----CGcGUCGUGCGCCaUGa--CCG- -5'
18280 3' -58.6 NC_004681.1 + 25814 0.69 0.460071
Target:  5'- uUCACCGC-CA-C-CGCGGUGCUcauGGCa -3'
miRNA:   3'- cAGUGGCGcGUcGuGCGCCAUGA---CCG- -5'
18280 3' -58.6 NC_004681.1 + 39235 0.69 0.460071
Target:  5'- cUCACCGUGC-GC-CGCGGcaagGGCg -3'
miRNA:   3'- cAGUGGCGCGuCGuGCGCCaugaCCG- -5'
18280 3' -58.6 NC_004681.1 + 33374 0.69 0.460071
Target:  5'- --gGCCGCGUcGCGCGCGccGUG-UGGCa -3'
miRNA:   3'- cagUGGCGCGuCGUGCGC--CAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 41677 0.68 0.479385
Target:  5'- aUCGCCGUGCGcuGCcUGCGGgg-UGGCg -3'
miRNA:   3'- cAGUGGCGCGU--CGuGCGCCaugACCG- -5'
18280 3' -58.6 NC_004681.1 + 57118 0.68 0.48919
Target:  5'- gGUCAauGagaGCGGCuacCGCGGUACcGGCu -3'
miRNA:   3'- -CAGUggCg--CGUCGu--GCGCCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 34434 0.68 0.499089
Target:  5'- -aCGCCGcCGCGGCGuaagacuuCG-GGUGCUGGg -3'
miRNA:   3'- caGUGGC-GCGUCGU--------GCgCCAUGACCg -5'
18280 3' -58.6 NC_004681.1 + 26332 0.68 0.499089
Target:  5'- -cCACCGCGUAGgGgGCGGgcaucGCcgccgUGGCg -3'
miRNA:   3'- caGUGGCGCGUCgUgCGCCa----UG-----ACCG- -5'
18280 3' -58.6 NC_004681.1 + 33306 0.68 0.505071
Target:  5'- -gCGCCGCGguGUACGcCGGgACguucgccguccagGGCa -3'
miRNA:   3'- caGUGGCGCguCGUGC-GCCaUGa------------CCG- -5'
18280 3' -58.6 NC_004681.1 + 39453 0.68 0.509075
Target:  5'- -gCACCG-GCuGCGacacaccucCGCGGUgcGCUGGCu -3'
miRNA:   3'- caGUGGCgCGuCGU---------GCGCCA--UGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.