miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18280 3' -58.6 NC_004681.1 + 19912 1.11 0.00047
Target:  5'- gGUCACCGCGCAGCACGCGGUACUGGCg -3'
miRNA:   3'- -CAGUGGCGCGUCGUGCGCCAUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 52978 0.77 0.140094
Target:  5'- uGUCGCCGCgGCucgGGCACGCGGgcagGCcgaUGGCc -3'
miRNA:   3'- -CAGUGGCG-CG---UCGUGCGCCa---UG---ACCG- -5'
18280 3' -58.6 NC_004681.1 + 2179 0.75 0.188914
Target:  5'- cGUCGCgGCGCAGUGCGCGGgagACgacauucgccuucgGGUa -3'
miRNA:   3'- -CAGUGgCGCGUCGUGCGCCa--UGa-------------CCG- -5'
18280 3' -58.6 NC_004681.1 + 14483 0.75 0.19186
Target:  5'- -cCGCCGaGCAGgGCGCgcugguggccGGUGCUGGCg -3'
miRNA:   3'- caGUGGCgCGUCgUGCG----------CCAUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 29408 0.75 0.196859
Target:  5'- -cCACCGCGUGGuCugGCGucACUGGCg -3'
miRNA:   3'- caGUGGCGCGUC-GugCGCcaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 9097 0.74 0.212542
Target:  5'- cGUCACCgGCGCcGCugGCucGGgcuCUGGCg -3'
miRNA:   3'- -CAGUGG-CGCGuCGugCG--CCau-GACCG- -5'
18280 3' -58.6 NC_004681.1 + 6678 0.74 0.223586
Target:  5'- cUCGCCGUGCAGCuCGC---ACUGGCc -3'
miRNA:   3'- cAGUGGCGCGUCGuGCGccaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 39930 0.74 0.235113
Target:  5'- --gGgCGCGguGCGCGCGGUGC-GGUc -3'
miRNA:   3'- cagUgGCGCguCGUGCGCCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 57902 0.73 0.241061
Target:  5'- uUCGCCaccucggcgGCGCGGCGCGUGGUcgcggucuccGgUGGCg -3'
miRNA:   3'- cAGUGG---------CGCGUCGUGCGCCA----------UgACCG- -5'
18280 3' -58.6 NC_004681.1 + 57804 0.72 0.279416
Target:  5'- -gCGCCGCGCcgccgagguGGCGaaggaGCGGgGCUGGCc -3'
miRNA:   3'- caGUGGCGCG---------UCGUg----CGCCaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 20263 0.72 0.31422
Target:  5'- aUCACCgaGCGCAGCcggggcaGCGUGGUGagcaugacgacCUGGCc -3'
miRNA:   3'- cAGUGG--CGCGUCG-------UGCGCCAU-----------GACCG- -5'
18280 3' -58.6 NC_004681.1 + 17582 0.71 0.32247
Target:  5'- -aCGCCGCGgccaAGCGcCGUGGUAUcGGCg -3'
miRNA:   3'- caGUGGCGCg---UCGU-GCGCCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 52952 0.71 0.33011
Target:  5'- cGUCACCGaCGUGGcCugGCag-GCUGGCg -3'
miRNA:   3'- -CAGUGGC-GCGUC-GugCGccaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 9496 0.71 0.353823
Target:  5'- gGUCACCGUGCgcgccgaagAGCGCcuCGGccUGCUGGUg -3'
miRNA:   3'- -CAGUGGCGCG---------UCGUGc-GCC--AUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 32698 0.71 0.354634
Target:  5'- -aCGUCGCGCGGCugGUGGaugaggaccucuuccGCUGGCa -3'
miRNA:   3'- caGUGGCGCGUCGugCGCCa--------------UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 40485 0.7 0.361991
Target:  5'- -aCACCG-GCcacGCugGCGGUgccgcucuuGCUGGCg -3'
miRNA:   3'- caGUGGCgCGu--CGugCGCCA---------UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 27666 0.7 0.361991
Target:  5'- gGUUACCGauacgGCGGCG-GCGGUGgUGGUg -3'
miRNA:   3'- -CAGUGGCg----CGUCGUgCGCCAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 23933 0.7 0.370289
Target:  5'- -aCGCUGCGCGGCGC-CGG-AUcGGCg -3'
miRNA:   3'- caGUGGCGCGUCGUGcGCCaUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 42463 0.7 0.378715
Target:  5'- -aCGCCuccgauGCGCGGCACuuGCGGcUGgUGGCa -3'
miRNA:   3'- caGUGG------CGCGUCGUG--CGCC-AUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 70191 0.7 0.378715
Target:  5'- ---cCCGUGU-GCGCGCGGUcucugaugccuACUGGCa -3'
miRNA:   3'- caguGGCGCGuCGUGCGCCA-----------UGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.