miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18280 3' -58.6 NC_004681.1 + 2179 0.75 0.188914
Target:  5'- cGUCGCgGCGCAGUGCGCGGgagACgacauucgccuucgGGUa -3'
miRNA:   3'- -CAGUGgCGCGUCGUGCGCCa--UGa-------------CCG- -5'
18280 3' -58.6 NC_004681.1 + 2437 0.68 0.509075
Target:  5'- uGUUGgCGCGCGGCACGCaGaagugGGCg -3'
miRNA:   3'- -CAGUgGCGCGUCGUGCGcCauga-CCG- -5'
18280 3' -58.6 NC_004681.1 + 2934 0.7 0.387269
Target:  5'- gGUgACCGUGUAGCG-GCGGUccccGCgGGCu -3'
miRNA:   3'- -CAgUGGCGCGUCGUgCGCCA----UGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 5325 0.69 0.42273
Target:  5'- aGUCAUUGCcaAGCGCGCacaGGcGCUGGCa -3'
miRNA:   3'- -CAGUGGCGcgUCGUGCG---CCaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 5878 0.67 0.580984
Target:  5'- uUCgACCGCGC-GCACGCuGGcuccucgaaUACcGGCa -3'
miRNA:   3'- cAG-UGGCGCGuCGUGCG-CC---------AUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 6678 0.74 0.223586
Target:  5'- cUCGCCGUGCAGCuCGC---ACUGGCc -3'
miRNA:   3'- cAGUGGCGCGUCGuGCGccaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 6678 0.66 0.600929
Target:  5'- -cCAUgGCGCccuugacGGCGCGCaGGUGCUucGGUg -3'
miRNA:   3'- caGUGgCGCG-------UCGUGCG-CCAUGA--CCG- -5'
18280 3' -58.6 NC_004681.1 + 9097 0.74 0.212542
Target:  5'- cGUCACCgGCGCcGCugGCucGGgcuCUGGCg -3'
miRNA:   3'- -CAGUGG-CGCGuCGugCG--CCau-GACCG- -5'
18280 3' -58.6 NC_004681.1 + 9496 0.71 0.353823
Target:  5'- gGUCACCGUGCgcgccgaagAGCGCcuCGGccUGCUGGUg -3'
miRNA:   3'- -CAGUGGCGCG---------UCGUGc-GCC--AUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 10330 0.66 0.633638
Target:  5'- gGUCACC-CGCAGCGaacCGgGGaGCcagGGCc -3'
miRNA:   3'- -CAGUGGcGCGUCGU---GCgCCaUGa--CCG- -5'
18280 3' -58.6 NC_004681.1 + 10846 0.69 0.42273
Target:  5'- -cCGCCGCGauuGCGaccucuccCGCGGUucacGCUGGCc -3'
miRNA:   3'- caGUGGCGCgu-CGU--------GCGCCA----UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 11219 0.68 0.509075
Target:  5'- -cCAgUGUGUGcGCACGCGGUGCgaauuccGGCa -3'
miRNA:   3'- caGUgGCGCGU-CGUGCGCCAUGa------CCG- -5'
18280 3' -58.6 NC_004681.1 + 12308 0.66 0.601982
Target:  5'- -cCACCGgggaUGCGGCGCGCGGggaagcccgACgccgGGUc -3'
miRNA:   3'- caGUGGC----GCGUCGUGCGCCa--------UGa---CCG- -5'
18280 3' -58.6 NC_004681.1 + 12504 0.7 0.403869
Target:  5'- cGUCACCggcucaccgacgaGCGUcGC-CGCGGUGgUGGUg -3'
miRNA:   3'- -CAGUGG-------------CGCGuCGuGCGCCAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 12682 0.67 0.560141
Target:  5'- -cCGCCGCGgAGCucaacCGUauGGagGCUGGCa -3'
miRNA:   3'- caGUGGCGCgUCGu----GCG--CCa-UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 12996 0.66 0.644199
Target:  5'- -aCACCGC-UGGCAcCGCGGacgACgUGGCc -3'
miRNA:   3'- caGUGGCGcGUCGU-GCGCCa--UG-ACCG- -5'
18280 3' -58.6 NC_004681.1 + 13094 0.66 0.623076
Target:  5'- cGUCGuCCGCGguGC-CaGCGGUguaGCcGGUg -3'
miRNA:   3'- -CAGU-GGCGCguCGuG-CGCCA---UGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 13136 0.69 0.42273
Target:  5'- -cCACCGCccuucGUGGCACgGCgGGUACgGGCg -3'
miRNA:   3'- caGUGGCG-----CGUCGUG-CG-CCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 14483 0.75 0.19186
Target:  5'- -cCGCCGaGCAGgGCGCgcugguggccGGUGCUGGCg -3'
miRNA:   3'- caGUGGCgCGUCgUGCG----------CCAUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 16153 0.67 0.529292
Target:  5'- aGUCugCGUuGCGGCggAUGCGGUGacagcGGCg -3'
miRNA:   3'- -CAGugGCG-CGUCG--UGCGCCAUga---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.