miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18280 3' -58.6 NC_004681.1 + 33306 0.68 0.505071
Target:  5'- -gCGCCGCGguGUACGcCGGgACguucgccguccagGGCa -3'
miRNA:   3'- caGUGGCGCguCGUGC-GCCaUGa------------CCG- -5'
18280 3' -58.6 NC_004681.1 + 5325 0.69 0.42273
Target:  5'- aGUCAUUGCcaAGCGCGCacaGGcGCUGGCa -3'
miRNA:   3'- -CAGUGGCGcgUCGUGCG---CCaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 63525 0.69 0.42273
Target:  5'- -aCAUCG-GCAaGCGCGCGGUAaUGGUu -3'
miRNA:   3'- caGUGGCgCGU-CGUGCGCCAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 13136 0.69 0.42273
Target:  5'- -cCACCGCccuucGUGGCACgGCgGGUACgGGCg -3'
miRNA:   3'- caGUGGCG-----CGUCGUG-CG-CCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 10846 0.69 0.42273
Target:  5'- -cCGCCGCGauuGCGaccucuccCGCGGUucacGCUGGCc -3'
miRNA:   3'- caGUGGCGCgu-CGU--------GCGCCA----UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 48653 0.69 0.450569
Target:  5'- -aCACCGCcucCAcGCugGCGGgaaccCUGGCg -3'
miRNA:   3'- caGUGGCGc--GU-CGugCGCCau---GACCG- -5'
18280 3' -58.6 NC_004681.1 + 25814 0.69 0.460071
Target:  5'- uUCACCGC-CA-C-CGCGGUGCUcauGGCa -3'
miRNA:   3'- cAGUGGCGcGUcGuGCGCCAUGA---CCG- -5'
18280 3' -58.6 NC_004681.1 + 39235 0.69 0.460071
Target:  5'- cUCACCGUGC-GC-CGCGGcaagGGCg -3'
miRNA:   3'- cAGUGGCGCGuCGuGCGCCaugaCCG- -5'
18280 3' -58.6 NC_004681.1 + 33374 0.69 0.460071
Target:  5'- --gGCCGCGUcGCGCGCGccGUG-UGGCa -3'
miRNA:   3'- cagUGGCGCGuCGUGCGC--CAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 23933 0.7 0.370289
Target:  5'- -aCGCUGCGCGGCGC-CGG-AUcGGCg -3'
miRNA:   3'- caGUGGCGCGUCGUGcGCCaUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 27666 0.7 0.361991
Target:  5'- gGUUACCGauacgGCGGCG-GCGGUGgUGGUg -3'
miRNA:   3'- -CAGUGGCg----CGUCGUgCGCCAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 32698 0.71 0.354634
Target:  5'- -aCGUCGCGCGGCugGUGGaugaggaccucuuccGCUGGCa -3'
miRNA:   3'- caGUGGCGCGUCGugCGCCa--------------UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 14483 0.75 0.19186
Target:  5'- -cCGCCGaGCAGgGCGCgcugguggccGGUGCUGGCg -3'
miRNA:   3'- caGUGGCgCGUCgUGCG----------CCAUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 29408 0.75 0.196859
Target:  5'- -cCACCGCGUGGuCugGCGucACUGGCg -3'
miRNA:   3'- caGUGGCGCGUC-GugCGCcaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 9097 0.74 0.212542
Target:  5'- cGUCACCgGCGCcGCugGCucGGgcuCUGGCg -3'
miRNA:   3'- -CAGUGG-CGCGuCGugCG--CCau-GACCG- -5'
18280 3' -58.6 NC_004681.1 + 6678 0.74 0.223586
Target:  5'- cUCGCCGUGCAGCuCGC---ACUGGCc -3'
miRNA:   3'- cAGUGGCGCGUCGuGCGccaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 57804 0.72 0.279416
Target:  5'- -gCGCCGCGCcgccgagguGGCGaaggaGCGGgGCUGGCc -3'
miRNA:   3'- caGUGGCGCG---------UCGUg----CGCCaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 17582 0.71 0.32247
Target:  5'- -aCGCCGCGgccaAGCGcCGUGGUAUcGGCg -3'
miRNA:   3'- caGUGGCGCg---UCGU-GCGCCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 52952 0.71 0.33011
Target:  5'- cGUCACCGaCGUGGcCugGCag-GCUGGCg -3'
miRNA:   3'- -CAGUGGC-GCGUC-GugCGccaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 9496 0.71 0.353823
Target:  5'- gGUCACCGUGCgcgccgaagAGCGCcuCGGccUGCUGGUg -3'
miRNA:   3'- -CAGUGGCGCG---------UCGUGc-GCC--AUGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.