Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18287 | 3' | -59 | NC_004681.1 | + | 3219 | 0.69 | 0.447625 |
Target: 5'- gCCGCUGGGCGcgcgauCCGAUCaggUAGUCCUg -3' miRNA: 3'- gGGCGACUCGCu-----GGUUGG---GUCAGGGu -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 18243 | 0.69 | 0.426475 |
Target: 5'- uUCCGUUGGGCguggggaacgggccGACCuGACCCGGUgCCu -3' miRNA: 3'- -GGGCGACUCG--------------CUGG-UUGGGUCAgGGu -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 51836 | 0.7 | 0.411229 |
Target: 5'- gCCCGCgccgGGGCGGCCGccgacgACCaccaGGUUCCc -3' miRNA: 3'- -GGGCGa---CUCGCUGGU------UGGg---UCAGGGu -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 26964 | 0.7 | 0.36841 |
Target: 5'- gCCGCcauagguggcggUGGG-GACCGGCCCacugcGGUCCCAg -3' miRNA: 3'- gGGCG------------ACUCgCUGGUUGGG-----UCAGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 1639 | 0.71 | 0.336424 |
Target: 5'- gCCCaGCUGAa-GGCUGGCCCGGUCaCCAg -3' miRNA: 3'- -GGG-CGACUcgCUGGUUGGGUCAG-GGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 25591 | 1.1 | 0.000645 |
Target: 5'- cCCCGCUGAGCGACCAACCCAGUCCCAc -3' miRNA: 3'- -GGGCGACUCGCUGGUUGGGUCAGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 29572 | 0.66 | 0.618043 |
Target: 5'- uCCCGgUGAgggacaggGUGACCGACUCAccgCCCGu -3' miRNA: 3'- -GGGCgACU--------CGCUGGUUGGGUca-GGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 35945 | 0.66 | 0.618043 |
Target: 5'- --aGCaUGAGCGACCG-CCCA--CCCAu -3' miRNA: 3'- gggCG-ACUCGCUGGUuGGGUcaGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 31119 | 0.66 | 0.596128 |
Target: 5'- gCCGCUGuccGCGuugcgcuugcACCAgucguaguugugcGCCCAGUCCa- -3' miRNA: 3'- gGGCGACu--CGC----------UGGU-------------UGGGUCAGGgu -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 64949 | 0.66 | 0.586769 |
Target: 5'- aCCaGCUGGgugaggucGCGGCgCAGguaCCAGUCCCAc -3' miRNA: 3'- gGG-CGACU--------CGCUG-GUUg--GGUCAGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 28602 | 0.67 | 0.525329 |
Target: 5'- aCCGCggGGGUGcCCGgggugagugugaGCCCAGcCCCGg -3' miRNA: 3'- gGGCGa-CUCGCuGGU------------UGGGUCaGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 68672 | 0.69 | 0.457001 |
Target: 5'- gCCCGCUGucgcuccaGGCGuGCCAGCaagUAGUCCUg -3' miRNA: 3'- -GGGCGAC--------UCGC-UGGUUGg--GUCAGGGu -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 74136 | 0.66 | 0.597169 |
Target: 5'- -aCGCgcacgGAGCGcUCAGCUCAG-CCCAg -3' miRNA: 3'- ggGCGa----CUCGCuGGUUGGGUCaGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 22675 | 0.68 | 0.466481 |
Target: 5'- gCCGUUGAuGCGGCUggcGACCCAGaCCa- -3' miRNA: 3'- gGGCGACU-CGCUGG---UUGGGUCaGGgu -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 48803 | 0.67 | 0.535422 |
Target: 5'- aCCGC-GGGCGACUcgaagccgAACUCGG-CCCAu -3' miRNA: 3'- gGGCGaCUCGCUGG--------UUGGGUCaGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 17502 | 0.66 | 0.613862 |
Target: 5'- aCCCGUgGGGCGGCCGuCCaugauguugacgaGGUCCUc -3' miRNA: 3'- -GGGCGaCUCGCUGGUuGGg------------UCAGGGu -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 22830 | 0.68 | 0.482826 |
Target: 5'- aCCCGaguGGCGGCCGugCCGGUguucugggucugugCCCAc -3' miRNA: 3'- -GGGCgacUCGCUGGUugGGUCA--------------GGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 12968 | 0.69 | 0.4292 |
Target: 5'- aCCCGC--AGCGGCCGuaguGCCCGacGUaCCCAg -3' miRNA: 3'- -GGGCGacUCGCUGGU----UGGGU--CA-GGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 62372 | 0.66 | 0.638959 |
Target: 5'- aUCGCaUGAGCGA---GCCCAuUCCCGg -3' miRNA: 3'- gGGCG-ACUCGCUgguUGGGUcAGGGU- -5' |
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18287 | 3' | -59 | NC_004681.1 | + | 39784 | 0.66 | 0.6285 |
Target: 5'- gCCCGCcGcGCGACCAucGCC---UCCCAc -3' miRNA: 3'- -GGGCGaCuCGCUGGU--UGGgucAGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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