Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18295 | 5' | -61.4 | NC_004681.1 | + | 20098 | 0.66 | 0.472346 |
Target: 5'- -aGCGccaaGUGCCCGgacugaccGGCCuGGAGGuuGUCg -3' miRNA: 3'- gcCGC----UACGGGC--------UCGG-CCUUCggCAG- -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 38153 | 0.66 | 0.501162 |
Target: 5'- gCGaGCGAgucaGcCCCGAgGCCGGAuGGCCcUCg -3' miRNA: 3'- -GC-CGCUa---C-GGGCU-CGGCCU-UCGGcAG- -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 64497 | 0.66 | 0.501162 |
Target: 5'- uGGCGaAUGCCucguacaggaCGAuGCCGGuGGCCauuGUCg -3' miRNA: 3'- gCCGC-UACGG----------GCU-CGGCCuUCGG---CAG- -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 17941 | 0.66 | 0.481861 |
Target: 5'- cCGG-GgcGCCCGGGuuGGugAGGCCGg- -3' miRNA: 3'- -GCCgCuaCGGGCUCggCC--UUCGGCag -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 52311 | 0.66 | 0.472346 |
Target: 5'- uCGGgGAUGgCgGGGCCGuucuuGGCCGUg -3' miRNA: 3'- -GCCgCUACgGgCUCGGCcu---UCGGCAg -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 48736 | 0.66 | 0.481861 |
Target: 5'- aGGCGGUGUcauugCCGAuGUagUGGuAGCCGUCc -3' miRNA: 3'- gCCGCUACG-----GGCU-CG--GCCuUCGGCAG- -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 16578 | 0.66 | 0.501162 |
Target: 5'- gGGCGcgGCgCCGAGUaguccgugGGggGCUGg- -3' miRNA: 3'- gCCGCuaCG-GGCUCGg-------CCuuCGGCag -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 15664 | 0.66 | 0.51094 |
Target: 5'- aCGGUcAUGCCCuGGUCGGu-GCCGg- -3' miRNA: 3'- -GCCGcUACGGGcUCGGCCuuCGGCag -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 65169 | 0.66 | 0.501162 |
Target: 5'- uCGGCGAccaCCCGAGCgGGGA-UCGUg -3' miRNA: 3'- -GCCGCUac-GGGCUCGgCCUUcGGCAg -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 71920 | 0.66 | 0.462927 |
Target: 5'- cCGaCGAUGUCCucaucGGCCGGAuuGCCGUa -3' miRNA: 3'- -GCcGCUACGGGc----UCGGCCUu-CGGCAg -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 12961 | 0.66 | 0.508978 |
Target: 5'- gCGGCcguaGUGCCCGAcguacccagcugcagGCUGGAcguaccggcgccaauGGCCGUa -3' miRNA: 3'- -GCCGc---UACGGGCU---------------CGGCCU---------------UCGGCAg -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 52894 | 0.66 | 0.488576 |
Target: 5'- cCGGCGAcgaaauccaaauccUGCCCGAcuCCG--AGCCGUUc -3' miRNA: 3'- -GCCGCU--------------ACGGGCUc-GGCcuUCGGCAG- -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 13407 | 0.66 | 0.501162 |
Target: 5'- gCGGCGAcgGCCUGGaCCGuGAgcAGCUGUUc -3' miRNA: 3'- -GCCGCUa-CGGGCUcGGC-CU--UCGGCAG- -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 40130 | 0.66 | 0.501162 |
Target: 5'- uCGGUGAccGCCCGGGacaGGcAGGCCG-Cg -3' miRNA: 3'- -GCCGCUa-CGGGCUCgg-CC-UUCGGCaG- -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 16125 | 0.67 | 0.453607 |
Target: 5'- gCGGCGgcGCCCuuGCCaGcAGCCGg- -3' miRNA: 3'- -GCCGCuaCGGGcuCGGcCuUCGGCag -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 69529 | 0.67 | 0.408611 |
Target: 5'- gGGUGAUGUCCa---CGGAGGCCGa- -3' miRNA: 3'- gCCGCUACGGGcucgGCCUUCGGCag -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 12290 | 0.67 | 0.44439 |
Target: 5'- gCGGgGAaGCCCGAcGCCGGGu-CCGg- -3' miRNA: 3'- -GCCgCUaCGGGCU-CGGCCUucGGCag -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 51600 | 0.67 | 0.44439 |
Target: 5'- uGGCGucgGUGUagCCGAGCUGGcggcAGCgGUCg -3' miRNA: 3'- gCCGC---UACG--GGCUCGGCCu---UCGgCAG- -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 42394 | 0.67 | 0.426278 |
Target: 5'- uGaCGAUGCucCCGAGCUGGGccuucuuccaGGCCGUg -3' miRNA: 3'- gCcGCUACG--GGCUCGGCCU----------UCGGCAg -5' |
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18295 | 5' | -61.4 | NC_004681.1 | + | 24763 | 0.67 | 0.417387 |
Target: 5'- uGGCGAUcaGCUCGGGCgGGuuGUCGg- -3' miRNA: 3'- gCCGCUA--CGGGCUCGgCCuuCGGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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