miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18295 5' -61.4 NC_004681.1 + 7498 0.7 0.298551
Target:  5'- cCGGuCGAUGCCUGGGCCuGGguGCgCG-Cg -3'
miRNA:   3'- -GCC-GCUACGGGCUCGG-CCuuCG-GCaG- -5'
18295 5' -61.4 NC_004681.1 + 71920 0.66 0.462927
Target:  5'- cCGaCGAUGUCCucaucGGCCGGAuuGCCGUa -3'
miRNA:   3'- -GCcGCUACGGGc----UCGGCCUu-CGGCAg -5'
18295 5' -61.4 NC_004681.1 + 52894 0.66 0.488576
Target:  5'- cCGGCGAcgaaauccaaauccUGCCCGAcuCCG--AGCCGUUc -3'
miRNA:   3'- -GCCGCU--------------ACGGGCUc-GGCcuUCGGCAG- -5'
18295 5' -61.4 NC_004681.1 + 13407 0.66 0.501162
Target:  5'- gCGGCGAcgGCCUGGaCCGuGAgcAGCUGUUc -3'
miRNA:   3'- -GCCGCUa-CGGGCUcGGC-CU--UCGGCAG- -5'
18295 5' -61.4 NC_004681.1 + 40130 0.66 0.501162
Target:  5'- uCGGUGAccGCCCGGGacaGGcAGGCCG-Cg -3'
miRNA:   3'- -GCCGCUa-CGGGCUCgg-CC-UUCGGCaG- -5'
18295 5' -61.4 NC_004681.1 + 849 0.7 0.291633
Target:  5'- gGGCG--GCa-GGGCCGGGuaGGCCGUCa -3'
miRNA:   3'- gCCGCuaCGggCUCGGCCU--UCGGCAG- -5'
18295 5' -61.4 NC_004681.1 + 16392 0.7 0.291633
Target:  5'- gCGGgGAUGCCCucgggGAGCUGGuAGCCc-- -3'
miRNA:   3'- -GCCgCUACGGG-----CUCGGCCuUCGGcag -5'
18295 5' -61.4 NC_004681.1 + 26362 0.7 0.298551
Target:  5'- uGGUGAUGCC---GCCGaGGAGuCCGUCa -3'
miRNA:   3'- gCCGCUACGGgcuCGGC-CUUC-GGCAG- -5'
18295 5' -61.4 NC_004681.1 + 33119 0.69 0.320064
Target:  5'- gGGCGAUGCcaugucCCGAgGUCGGcAGGCCGc- -3'
miRNA:   3'- gCCGCUACG------GGCU-CGGCC-UUCGGCag -5'
18295 5' -61.4 NC_004681.1 + 18515 0.69 0.332005
Target:  5'- -aGCGAUGCCCGAuCCGGGugcgaaggcguuuGCCGcCg -3'
miRNA:   3'- gcCGCUACGGGCUcGGCCUu------------CGGCaG- -5'
18295 5' -61.4 NC_004681.1 + 48670 0.69 0.342719
Target:  5'- gGGCGugGCCCacgaugcagcaGGGCUGGGugcuGCCGUCg -3'
miRNA:   3'- gCCGCuaCGGG-----------CUCGGCCUu---CGGCAG- -5'
18295 5' -61.4 NC_004681.1 + 10293 0.71 0.246701
Target:  5'- uGGcCGGUGCUCcacucgGAGCCGGGgaGGCCGgUCg -3'
miRNA:   3'- gCC-GCUACGGG------CUCGGCCU--UCGGC-AG- -5'
18295 5' -61.4 NC_004681.1 + 69245 0.71 0.240771
Target:  5'- cCGGUGGUGUagCCGAGCCGGuAGgCGa- -3'
miRNA:   3'- -GCCGCUACG--GGCUCGGCCuUCgGCag -5'
18295 5' -61.4 NC_004681.1 + 14800 0.71 0.233241
Target:  5'- aGGCGGUGUaacccaccguggggCCGAGCUGaagcAGGCCGUCc -3'
miRNA:   3'- gCCGCUACG--------------GGCUCGGCc---UUCGGCAG- -5'
18295 5' -61.4 NC_004681.1 + 67529 0.73 0.192625
Target:  5'- uCGGUGAUGUCCGGGuuGGccuuGAGCCa-- -3'
miRNA:   3'- -GCCGCUACGGGCUCggCC----UUCGGcag -5'
18295 5' -61.4 NC_004681.1 + 15927 0.73 0.175851
Target:  5'- gGGUcuGGUGCucaCCGAGCCacugugcgacguugcGGAGGCCGUCa -3'
miRNA:   3'- gCCG--CUACG---GGCUCGG---------------CCUUCGGCAG- -5'
18295 5' -61.4 NC_004681.1 + 18123 0.75 0.141685
Target:  5'- aGGCGuUGCCCGAGCCGuacuGGcCCGUg -3'
miRNA:   3'- gCCGCuACGGGCUCGGCcu--UC-GGCAg -5'
18295 5' -61.4 NC_004681.1 + 2000 0.75 0.134497
Target:  5'- uGGuUGAguUGCCCGcauGCCGGAAGCCGg- -3'
miRNA:   3'- gCC-GCU--ACGGGCu--CGGCCUUCGGCag -5'
18295 5' -61.4 NC_004681.1 + 51850 0.76 0.114903
Target:  5'- cCGGCGuuacucuUGCCCGcGCCGGGgcGGCCGcCg -3'
miRNA:   3'- -GCCGCu------ACGGGCuCGGCCU--UCGGCaG- -5'
18295 5' -61.4 NC_004681.1 + 15664 0.66 0.51094
Target:  5'- aCGGUcAUGCCCuGGUCGGu-GCCGg- -3'
miRNA:   3'- -GCCGcUACGGGcUCGGCCuuCGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.