miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18295 5' -61.4 NC_004681.1 + 849 0.7 0.291633
Target:  5'- gGGCG--GCa-GGGCCGGGuaGGCCGUCa -3'
miRNA:   3'- gCCGCuaCGggCUCGGCCU--UCGGCAG- -5'
18295 5' -61.4 NC_004681.1 + 2000 0.75 0.134497
Target:  5'- uGGuUGAguUGCCCGcauGCCGGAAGCCGg- -3'
miRNA:   3'- gCC-GCU--ACGGGCu--CGGCCUUCGGCag -5'
18295 5' -61.4 NC_004681.1 + 7430 0.69 0.342719
Target:  5'- gCGGCGGggucaGCCCcggguGCCGGggGUggaaCGUCg -3'
miRNA:   3'- -GCCGCUa----CGGGcu---CGGCCuuCG----GCAG- -5'
18295 5' -61.4 NC_004681.1 + 7498 0.7 0.298551
Target:  5'- cCGGuCGAUGCCUGGGCCuGGguGCgCG-Cg -3'
miRNA:   3'- -GCC-GCUACGGGCUCGG-CCuuCG-GCaG- -5'
18295 5' -61.4 NC_004681.1 + 10293 0.71 0.246701
Target:  5'- uGGcCGGUGCUCcacucgGAGCCGGGgaGGCCGgUCg -3'
miRNA:   3'- gCC-GCUACGGG------CUCGGCCU--UCGGC-AG- -5'
18295 5' -61.4 NC_004681.1 + 12290 0.67 0.44439
Target:  5'- gCGGgGAaGCCCGAcGCCGGGu-CCGg- -3'
miRNA:   3'- -GCCgCUaCGGGCU-CGGCCUucGGCag -5'
18295 5' -61.4 NC_004681.1 + 12961 0.66 0.508978
Target:  5'- gCGGCcguaGUGCCCGAcguacccagcugcagGCUGGAcguaccggcgccaauGGCCGUa -3'
miRNA:   3'- -GCCGc---UACGGGCU---------------CGGCCU---------------UCGGCAg -5'
18295 5' -61.4 NC_004681.1 + 13407 0.66 0.501162
Target:  5'- gCGGCGAcgGCCUGGaCCGuGAgcAGCUGUUc -3'
miRNA:   3'- -GCCGCUa-CGGGCUcGGC-CU--UCGGCAG- -5'
18295 5' -61.4 NC_004681.1 + 14800 0.71 0.233241
Target:  5'- aGGCGGUGUaacccaccguggggCCGAGCUGaagcAGGCCGUCc -3'
miRNA:   3'- gCCGCUACG--------------GGCUCGGCc---UUCGGCAG- -5'
18295 5' -61.4 NC_004681.1 + 15664 0.66 0.51094
Target:  5'- aCGGUcAUGCCCuGGUCGGu-GCCGg- -3'
miRNA:   3'- -GCCGcUACGGGcUCGGCCuuCGGCag -5'
18295 5' -61.4 NC_004681.1 + 15927 0.73 0.175851
Target:  5'- gGGUcuGGUGCucaCCGAGCCacugugcgacguugcGGAGGCCGUCa -3'
miRNA:   3'- gCCG--CUACG---GGCUCGG---------------CCUUCGGCAG- -5'
18295 5' -61.4 NC_004681.1 + 16125 0.67 0.453607
Target:  5'- gCGGCGgcGCCCuuGCCaGcAGCCGg- -3'
miRNA:   3'- -GCCGCuaCGGGcuCGGcCuUCGGCag -5'
18295 5' -61.4 NC_004681.1 + 16392 0.7 0.291633
Target:  5'- gCGGgGAUGCCCucgggGAGCUGGuAGCCc-- -3'
miRNA:   3'- -GCCgCUACGGG-----CUCGGCCuUCGGcag -5'
18295 5' -61.4 NC_004681.1 + 16578 0.66 0.501162
Target:  5'- gGGCGcgGCgCCGAGUaguccgugGGggGCUGg- -3'
miRNA:   3'- gCCGCuaCG-GGCUCGg-------CCuuCGGCag -5'
18295 5' -61.4 NC_004681.1 + 17941 0.66 0.481861
Target:  5'- cCGG-GgcGCCCGGGuuGGugAGGCCGg- -3'
miRNA:   3'- -GCCgCuaCGGGCUCggCC--UUCGGCag -5'
18295 5' -61.4 NC_004681.1 + 18123 0.75 0.141685
Target:  5'- aGGCGuUGCCCGAGCCGuacuGGcCCGUg -3'
miRNA:   3'- gCCGCuACGGGCUCGGCcu--UC-GGCAg -5'
18295 5' -61.4 NC_004681.1 + 18515 0.69 0.332005
Target:  5'- -aGCGAUGCCCGAuCCGGGugcgaaggcguuuGCCGcCg -3'
miRNA:   3'- gcCGCUACGGGCUcGGCCUu------------CGGCaG- -5'
18295 5' -61.4 NC_004681.1 + 20098 0.66 0.472346
Target:  5'- -aGCGccaaGUGCCCGgacugaccGGCCuGGAGGuuGUCg -3'
miRNA:   3'- gcCGC----UACGGGC--------UCGG-CCUUCggCAG- -5'
18295 5' -61.4 NC_004681.1 + 23552 0.68 0.374686
Target:  5'- uGGCGgcGCCCGAcccaucagaacuGCgGGAguGGCCGa- -3'
miRNA:   3'- gCCGCuaCGGGCU------------CGgCCU--UCGGCag -5'
18295 5' -61.4 NC_004681.1 + 24763 0.67 0.417387
Target:  5'- uGGCGAUcaGCUCGGGCgGGuuGUCGg- -3'
miRNA:   3'- gCCGCUA--CGGGCUCGgCCuuCGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.