miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18306 3' -54.2 NC_004681.1 + 21228 0.66 0.84986
Target:  5'- -aGUGGggacCACCACAAUggGCgucaUGAGCg -3'
miRNA:   3'- cgCGCCa---GUGGUGUUGaaCG----ACUCGa -5'
18306 3' -54.2 NC_004681.1 + 62001 0.66 0.84986
Target:  5'- uCGCGGU-GCCACAGCgccaacugGUUGAgGCa -3'
miRNA:   3'- cGCGCCAgUGGUGUUGaa------CGACU-CGa -5'
18306 3' -54.2 NC_004681.1 + 50530 0.66 0.841291
Target:  5'- gGCaCGGagAUCGCGG-UUGCUGAGCg -3'
miRNA:   3'- -CGcGCCagUGGUGUUgAACGACUCGa -5'
18306 3' -54.2 NC_004681.1 + 57465 0.66 0.833393
Target:  5'- cGCGCGGUCccuggagcucauccuCUACGGCgaGCgugaGAGCg -3'
miRNA:   3'- -CGCGCCAGu--------------GGUGUUGaaCGa---CUCGa -5'
18306 3' -54.2 NC_004681.1 + 72236 0.66 0.832505
Target:  5'- aGCGCaacgugaucgaaGGUCGCaACggUgagGCUGGGCUg -3'
miRNA:   3'- -CGCG------------CCAGUGgUGuuGaa-CGACUCGA- -5'
18306 3' -54.2 NC_004681.1 + 36578 0.66 0.832505
Target:  5'- cCGUaga-ACCACgGGCUUGCUGAGCUc -3'
miRNA:   3'- cGCGccagUGGUG-UUGAACGACUCGA- -5'
18306 3' -54.2 NC_004681.1 + 20038 0.66 0.81432
Target:  5'- cCGCGGggagCACCu--GCgUGUUGAGCa -3'
miRNA:   3'- cGCGCCa---GUGGuguUGaACGACUCGa -5'
18306 3' -54.2 NC_004681.1 + 40471 0.66 0.81432
Target:  5'- -gGCGGU-GCCGCu-CUUGCUG-GCg -3'
miRNA:   3'- cgCGCCAgUGGUGuuGAACGACuCGa -5'
18306 3' -54.2 NC_004681.1 + 42453 0.66 0.81432
Target:  5'- uGCGCGG-CACuUGCGGCUggugGCauugGAGCg -3'
miRNA:   3'- -CGCGCCaGUG-GUGUUGAa---CGa---CUCGa -5'
18306 3' -54.2 NC_004681.1 + 58796 0.66 0.804939
Target:  5'- gGCGCGcG-C-CCAgGAgUUGCUGGGCc -3'
miRNA:   3'- -CGCGC-CaGuGGUgUUgAACGACUCGa -5'
18306 3' -54.2 NC_004681.1 + 30188 0.66 0.804939
Target:  5'- cCGUGGUUGuCaCACAugUgcgGCUGAGCc -3'
miRNA:   3'- cGCGCCAGU-G-GUGUugAa--CGACUCGa -5'
18306 3' -54.2 NC_004681.1 + 19618 0.67 0.79538
Target:  5'- gGCGUGGUCgAUgACGGCgagGgUGGGCa -3'
miRNA:   3'- -CGCGCCAG-UGgUGUUGaa-CgACUCGa -5'
18306 3' -54.2 NC_004681.1 + 14496 0.67 0.79538
Target:  5'- cGCGCuGGUgGCCGguGCUgGCgcGAGCa -3'
miRNA:   3'- -CGCG-CCAgUGGUguUGAaCGa-CUCGa -5'
18306 3' -54.2 NC_004681.1 + 31552 0.67 0.794415
Target:  5'- uUGCGGUCAggccguCCGCAgaguucaugucgcACUUGCcgaaggGAGCUg -3'
miRNA:   3'- cGCGCCAGU------GGUGU-------------UGAACGa-----CUCGA- -5'
18306 3' -54.2 NC_004681.1 + 14223 0.67 0.775768
Target:  5'- gGCGCua-CGCCGCuACcagGCUGAGCUg -3'
miRNA:   3'- -CGCGccaGUGGUGuUGaa-CGACUCGA- -5'
18306 3' -54.2 NC_004681.1 + 44938 0.67 0.765737
Target:  5'- aCGCGGUggagcCGCCACcGCgaGCUcGGGCUc -3'
miRNA:   3'- cGCGCCA-----GUGGUGuUGaaCGA-CUCGA- -5'
18306 3' -54.2 NC_004681.1 + 3496 0.67 0.764727
Target:  5'- cGCGCGGgCGCCGCGgccaacuucucagACUUccGCUGcaGGCg -3'
miRNA:   3'- -CGCGCCaGUGGUGU-------------UGAA--CGAC--UCGa -5'
18306 3' -54.2 NC_004681.1 + 9317 0.68 0.74528
Target:  5'- cGCGCGGguucaUCACCACAGCguucgGGGUc -3'
miRNA:   3'- -CGCGCC-----AGUGGUGUUGaacgaCUCGa -5'
18306 3' -54.2 NC_004681.1 + 67479 0.68 0.744244
Target:  5'- aGCGCGGugagcgggacgauUCugUACGGCcUGCUGcGCg -3'
miRNA:   3'- -CGCGCC-------------AGugGUGUUGaACGACuCGa -5'
18306 3' -54.2 NC_004681.1 + 19826 0.68 0.734876
Target:  5'- uGCGCGGUgACCcCGGCUucgaggUGCUGucCUa -3'
miRNA:   3'- -CGCGCCAgUGGuGUUGA------ACGACucGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.