miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18306 5' -48.7 NC_004681.1 + 52958 0.66 0.985268
Target:  5'- -cGACGUGgccUGGCAGgC-UGGCGGCa -3'
miRNA:   3'- caUUGUACau-GCUGUCgGuACCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 29740 0.66 0.980997
Target:  5'- uUAGCGUGuUGCcauCGGUCGUGGuCGACg -3'
miRNA:   3'- cAUUGUAC-AUGcu-GUCGGUACC-GUUG- -5'
18306 5' -48.7 NC_004681.1 + 49148 0.66 0.980997
Target:  5'- --cGCGUG-ACGAUGGCagcGGCGACa -3'
miRNA:   3'- cauUGUACaUGCUGUCGguaCCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 69169 0.66 0.980284
Target:  5'- --cGCGUGUACGcaccacugaaaggcGCAGCCAUcGGUGucGCa -3'
miRNA:   3'- cauUGUACAUGC--------------UGUCGGUA-CCGU--UG- -5'
18306 5' -48.7 NC_004681.1 + 14674 0.66 0.978285
Target:  5'- --uGCcgGUgccgaagGCGACugcGGCCGUGGUGGCg -3'
miRNA:   3'- cauUGuaCA-------UGCUG---UCGGUACCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 54271 0.66 0.975862
Target:  5'- ----gAUG-ACGACAGCCuuguugacgGUGGCGAUu -3'
miRNA:   3'- cauugUACaUGCUGUCGG---------UACCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 20273 0.67 0.972944
Target:  5'- -cGACAaGUcgaucaccgaGCG-CAGCCggGGCAGCg -3'
miRNA:   3'- caUUGUaCA----------UGCuGUCGGuaCCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 33436 0.67 0.972944
Target:  5'- cGUGAUGUGcggGCGGguGCCcUGGaCGGCg -3'
miRNA:   3'- -CAUUGUACa--UGCUguCGGuACC-GUUG- -5'
18306 5' -48.7 NC_004681.1 + 16858 0.67 0.971075
Target:  5'- -cGACGUGU-CGACAGgCAggaccggagcgucaGGCAGCu -3'
miRNA:   3'- caUUGUACAuGCUGUCgGUa-------------CCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 5303 0.67 0.969779
Target:  5'- --uGCAucUGUgGCGACagcucGGCCAUGGCGGg -3'
miRNA:   3'- cauUGU--ACA-UGCUG-----UCGGUACCGUUg -5'
18306 5' -48.7 NC_004681.1 + 69874 0.67 0.969779
Target:  5'- --uACGUGcGCG-CGGCCGcUGGCAAa -3'
miRNA:   3'- cauUGUACaUGCuGUCGGU-ACCGUUg -5'
18306 5' -48.7 NC_004681.1 + 45497 0.67 0.968442
Target:  5'- -cAACGaGUACGACGGCgAccccuacuacaagGGCGACg -3'
miRNA:   3'- caUUGUaCAUGCUGUCGgUa------------CCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 58755 0.67 0.966358
Target:  5'- uGUGGCccGcgGCGcagGCGGCCGUGGCGc- -3'
miRNA:   3'- -CAUUGuaCa-UGC---UGUCGGUACCGUug -5'
18306 5' -48.7 NC_004681.1 + 74210 0.67 0.966358
Target:  5'- -cAACGUGUuuGACAGCCucaugcgucgGGCGGa -3'
miRNA:   3'- caUUGUACAugCUGUCGGua--------CCGUUg -5'
18306 5' -48.7 NC_004681.1 + 28111 0.68 0.954479
Target:  5'- -cAACGggaccaGCGACGGCCccgcgGGCAACg -3'
miRNA:   3'- caUUGUaca---UGCUGUCGGua---CCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 71207 0.68 0.949959
Target:  5'- -gGACAcuUGcAUGACGGuCCAUGGuCAACu -3'
miRNA:   3'- caUUGU--ACaUGCUGUC-GGUACC-GUUG- -5'
18306 5' -48.7 NC_004681.1 + 16198 0.68 0.934644
Target:  5'- cGUGGCGgcUGUGCGcGCcGCgGUGGUGACg -3'
miRNA:   3'- -CAUUGU--ACAUGC-UGuCGgUACCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 44683 0.68 0.934644
Target:  5'- ------aGUGCGGCGGCCGcgagcgcGGCGGCg -3'
miRNA:   3'- cauuguaCAUGCUGUCGGUa------CCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 62072 0.69 0.928946
Target:  5'- aUGAC-UGUGCG-CGG-CAUGGCGGCc -3'
miRNA:   3'- cAUUGuACAUGCuGUCgGUACCGUUG- -5'
18306 5' -48.7 NC_004681.1 + 16709 0.69 0.916651
Target:  5'- ---cCggGUAUGACgGGCgGUGGCAGCg -3'
miRNA:   3'- cauuGuaCAUGCUG-UCGgUACCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.