Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 30139 | 0.66 | 0.803575 |
Target: 5'- ---cGagGCCGaugGCCgCGGCGGCGa -3' miRNA: 3'- aguaCagCGGCaaaCGGaGCCGCUGC- -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 67990 | 0.66 | 0.81279 |
Target: 5'- ---aGUCGCCGg-UGUCaagGGCGACGa -3' miRNA: 3'- aguaCAGCGGCaaACGGag-CCGCUGC- -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 60355 | 0.66 | 0.820931 |
Target: 5'- gUCGUgGUUGCgCGUaaGCCUCucgugggcacgguGGCGGCGa -3' miRNA: 3'- -AGUA-CAGCG-GCAaaCGGAG-------------CCGCUGC- -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 47469 | 0.66 | 0.794189 |
Target: 5'- aUCAgGUCGCCGcgUGCgaCGGCcACu -3' miRNA: 3'- -AGUaCAGCGGCaaACGgaGCCGcUGc -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 29535 | 0.66 | 0.81279 |
Target: 5'- -gGUGUaGCCG-UUGCCcgaGGCGACc -3' miRNA: 3'- agUACAgCGGCaAACGGag-CCGCUGc -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 55843 | 0.66 | 0.830675 |
Target: 5'- -gGUGcUCGUgGUauUUGCCUUGGCuACGa -3' miRNA: 3'- agUAC-AGCGgCA--AACGGAGCCGcUGC- -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 42828 | 0.66 | 0.830675 |
Target: 5'- -gAUGUCGUCGUcgGUUUUGGUGAa- -3' miRNA: 3'- agUACAGCGGCAaaCGGAGCCGCUgc -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 17925 | 0.66 | 0.830675 |
Target: 5'- -gGUGagGCCGg-UGCCUUGcGCGGCc -3' miRNA: 3'- agUACagCGGCaaACGGAGC-CGCUGc -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 19110 | 0.66 | 0.821827 |
Target: 5'- -gGUGUCGCCGU----CUUGGCGAg- -3' miRNA: 3'- agUACAGCGGCAaacgGAGCCGCUgc -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 58535 | 0.67 | 0.734874 |
Target: 5'- aCGUGggCGCCGgucuugGCgUCGGCcGCGg -3' miRNA: 3'- aGUACa-GCGGCaaa---CGgAGCCGcUGC- -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 49932 | 0.67 | 0.774948 |
Target: 5'- aCGUGaaaGCCc-UUGuCCUCGGCGGCa -3' miRNA: 3'- aGUACag-CGGcaAAC-GGAGCCGCUGc -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 19365 | 0.67 | 0.745065 |
Target: 5'- cCggGUCGaCCacaccgGCCUgGGCGACGg -3' miRNA: 3'- aGuaCAGC-GGcaaa--CGGAgCCGCUGC- -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 57756 | 0.67 | 0.745065 |
Target: 5'- -gGUGuUCGCCGa--GCUUCaGGCGACa -3' miRNA: 3'- agUAC-AGCGGCaaaCGGAG-CCGCUGc -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 32922 | 0.67 | 0.755148 |
Target: 5'- uUCggGUCGCUGcgcaucGCCugaaggacuucaUCGGCGGCGg -3' miRNA: 3'- -AGuaCAGCGGCaaa---CGG------------AGCCGCUGC- -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 1359 | 0.67 | 0.774948 |
Target: 5'- aCAUGuUCGCCGUguucUGCgaggCGGUGGCc -3' miRNA: 3'- aGUAC-AGCGGCAa---ACGga--GCCGCUGc -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 32460 | 0.67 | 0.765113 |
Target: 5'- ----cUCGCCGcggGCCggaUCGGUGACGa -3' miRNA: 3'- aguacAGCGGCaaaCGG---AGCCGCUGC- -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 51276 | 0.68 | 0.714209 |
Target: 5'- gCAUGgCGCCGaggacUGCugaCUCGGCGGCu -3' miRNA: 3'- aGUACaGCGGCaa---ACG---GAGCCGCUGc -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 15759 | 0.68 | 0.689014 |
Target: 5'- ---cGUCGCCGUUggcgucugcgugaGCCUCGcGCG-CGg -3' miRNA: 3'- aguaCAGCGGCAAa------------CGGAGC-CGCuGC- -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 14307 | 0.68 | 0.724585 |
Target: 5'- gCGUagCGCCGUUucUGCUUCGGUGcCGa -3' miRNA: 3'- aGUAcaGCGGCAA--ACGGAGCCGCuGC- -5' |
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18314 | 3' | -55.2 | NC_004681.1 | + | 15499 | 0.68 | 0.728712 |
Target: 5'- uUCAUGUCcuuggcggacaggguGCCGUUcuggaugGCgUCGGCGaACGc -3' miRNA: 3'- -AGUACAG---------------CGGCAAa------CGgAGCCGC-UGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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