Results 1 - 20 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 1359 | 0.67 | 0.774948 |
Target: 5'- aCAUGuUCGCCGUguucUGCgaggCGGUGGCc -3' miRNA: 3'- aGUAC-AGCGGCAa---ACGga--GCCGCUGc -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 5161 | 0.69 | 0.633587 |
Target: 5'- aCA--UCGCCGaauuccagguugGCCUUGGCGACGu -3' miRNA: 3'- aGUacAGCGGCaaa---------CGGAGCCGCUGC- -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 6678 | 0.69 | 0.649638 |
Target: 5'- cCAUGgCGCCcUUgacggcgcgcaggUGCUUCGGUGACGa -3' miRNA: 3'- aGUACaGCGGcAA-------------ACGGAGCCGCUGC- -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 8405 | 0.68 | 0.714209 |
Target: 5'- -gAUGUCGuuGUccagGCCguccUUGGCGGCGu -3' miRNA: 3'- agUACAGCggCAaa--CGG----AGCCGCUGC- -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 11990 | 0.68 | 0.714209 |
Target: 5'- aCAUGaccucuUCGUCGU---CCUCGGUGACGu -3' miRNA: 3'- aGUAC------AGCGGCAaacGGAGCCGCUGC- -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 14307 | 0.68 | 0.724585 |
Target: 5'- gCGUagCGCCGUUucUGCUUCGGUGcCGa -3' miRNA: 3'- aGUAcaGCGGCAA--ACGGAGCCGCuGC- -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 15499 | 0.68 | 0.728712 |
Target: 5'- uUCAUGUCcuuggcggacaggguGCCGUUcuggaugGCgUCGGCGaACGc -3' miRNA: 3'- -AGUACAG---------------CGGCAAa------CGgAGCCGC-UGC- -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 15759 | 0.68 | 0.689014 |
Target: 5'- ---cGUCGCCGUUggcgucugcgugaGCCUCGcGCG-CGg -3' miRNA: 3'- aguaCAGCGGCAAa------------CGGAGC-CGCuGC- -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 17925 | 0.66 | 0.830675 |
Target: 5'- -gGUGagGCCGg-UGCCUUGcGCGGCc -3' miRNA: 3'- agUACagCGGCaaACGGAGC-CGCUGc -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 19110 | 0.66 | 0.821827 |
Target: 5'- -gGUGUCGCCGU----CUUGGCGAg- -3' miRNA: 3'- agUACAGCGGCAaacgGAGCCGCUgc -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 19365 | 0.67 | 0.745065 |
Target: 5'- cCggGUCGaCCacaccgGCCUgGGCGACGg -3' miRNA: 3'- aGuaCAGC-GGcaaa--CGGAgCCGCUGC- -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 27921 | 0.68 | 0.714209 |
Target: 5'- -----aCGCgGg--GCCUCGGCGGCa -3' miRNA: 3'- aguacaGCGgCaaaCGGAGCCGCUGc -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 29535 | 0.66 | 0.81279 |
Target: 5'- -gGUGUaGCCG-UUGCCcgaGGCGACc -3' miRNA: 3'- agUACAgCGGCaAACGGag-CCGCUGc -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 30139 | 0.66 | 0.803575 |
Target: 5'- ---cGagGCCGaugGCCgCGGCGGCGa -3' miRNA: 3'- aguaCagCGGCaaaCGGaGCCGCUGC- -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 32460 | 0.67 | 0.765113 |
Target: 5'- ----cUCGCCGcggGCCggaUCGGUGACGa -3' miRNA: 3'- aguacAGCGGCaaaCGG---AGCCGCUGC- -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 32922 | 0.67 | 0.755148 |
Target: 5'- uUCggGUCGCUGcgcaucGCCugaaggacuucaUCGGCGGCGg -3' miRNA: 3'- -AGuaCAGCGGCaaa---CGG------------AGCCGCUGC- -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 40570 | 0.68 | 0.724585 |
Target: 5'- ---cGUCGCCGag-GCaaaCGGCGACa -3' miRNA: 3'- aguaCAGCGGCaaaCGga-GCCGCUGc -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 40671 | 1.08 | 0.001847 |
Target: 5'- cUCAUGUCGCCGUUUGCCUCGGCGACGc -3' miRNA: 3'- -AGUACAGCGGCAAACGGAGCCGCUGC- -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 41680 | 0.68 | 0.724585 |
Target: 5'- uUCA--UCGCCGUgcgcUGCCUgCGGgGugGc -3' miRNA: 3'- -AGUacAGCGGCAa---ACGGA-GCCgCugC- -5' |
|||||||
18314 | 3' | -55.2 | NC_004681.1 | + | 42828 | 0.66 | 0.830675 |
Target: 5'- -gAUGUCGUCGUcgGUUUUGGUGAa- -3' miRNA: 3'- agUACAGCGGCAaaCGGAGCCGCUgc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home