miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18314 3' -55.2 NC_004681.1 + 27921 0.68 0.714209
Target:  5'- -----aCGCgGg--GCCUCGGCGGCa -3'
miRNA:   3'- aguacaGCGgCaaaCGGAGCCGCUGc -5'
18314 3' -55.2 NC_004681.1 + 60355 0.66 0.820931
Target:  5'- gUCGUgGUUGCgCGUaaGCCUCucgugggcacgguGGCGGCGa -3'
miRNA:   3'- -AGUA-CAGCG-GCAaaCGGAG-------------CCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 47469 0.66 0.794189
Target:  5'- aUCAgGUCGCCGcgUGCgaCGGCcACu -3'
miRNA:   3'- -AGUaCAGCGGCaaACGgaGCCGcUGc -5'
18314 3' -55.2 NC_004681.1 + 1359 0.67 0.774948
Target:  5'- aCAUGuUCGCCGUguucUGCgaggCGGUGGCc -3'
miRNA:   3'- aGUAC-AGCGGCAa---ACGga--GCCGCUGc -5'
18314 3' -55.2 NC_004681.1 + 32922 0.67 0.755148
Target:  5'- uUCggGUCGCUGcgcaucGCCugaaggacuucaUCGGCGGCGg -3'
miRNA:   3'- -AGuaCAGCGGCaaa---CGG------------AGCCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 57756 0.67 0.745065
Target:  5'- -gGUGuUCGCCGa--GCUUCaGGCGACa -3'
miRNA:   3'- agUAC-AGCGGCaaaCGGAG-CCGCUGc -5'
18314 3' -55.2 NC_004681.1 + 19365 0.67 0.745065
Target:  5'- cCggGUCGaCCacaccgGCCUgGGCGACGg -3'
miRNA:   3'- aGuaCAGC-GGcaaa--CGGAgCCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 40570 0.68 0.724585
Target:  5'- ---cGUCGCCGag-GCaaaCGGCGACa -3'
miRNA:   3'- aguaCAGCGGCaaaCGga-GCCGCUGc -5'
18314 3' -55.2 NC_004681.1 + 15499 0.68 0.728712
Target:  5'- uUCAUGUCcuuggcggacaggguGCCGUUcuggaugGCgUCGGCGaACGc -3'
miRNA:   3'- -AGUACAG---------------CGGCAAa------CGgAGCCGC-UGC- -5'
18314 3' -55.2 NC_004681.1 + 14307 0.68 0.724585
Target:  5'- gCGUagCGCCGUUucUGCUUCGGUGcCGa -3'
miRNA:   3'- aGUAcaGCGGCAA--ACGGAGCCGCuGC- -5'
18314 3' -55.2 NC_004681.1 + 41680 0.68 0.724585
Target:  5'- uUCA--UCGCCGUgcgcUGCCUgCGGgGugGc -3'
miRNA:   3'- -AGUacAGCGGCAa---ACGGA-GCCgCugC- -5'
18314 3' -55.2 NC_004681.1 + 8405 0.68 0.714209
Target:  5'- -gAUGUCGuuGUccagGCCguccUUGGCGGCGu -3'
miRNA:   3'- agUACAGCggCAaa--CGG----AGCCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 11990 0.68 0.714209
Target:  5'- aCAUGaccucuUCGUCGU---CCUCGGUGACGu -3'
miRNA:   3'- aGUAC------AGCGGCAaacGGAGCCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 51276 0.68 0.714209
Target:  5'- gCAUGgCGCCGaggacUGCugaCUCGGCGGCu -3'
miRNA:   3'- aGUACaGCGGCaa---ACG---GAGCCGCUGc -5'
18314 3' -55.2 NC_004681.1 + 15759 0.68 0.689014
Target:  5'- ---cGUCGCCGUUggcgucugcgugaGCCUCGcGCG-CGg -3'
miRNA:   3'- aguaCAGCGGCAAa------------CGGAGC-CGCuGC- -5'
18314 3' -55.2 NC_004681.1 + 6678 0.69 0.649638
Target:  5'- cCAUGgCGCCcUUgacggcgcgcaggUGCUUCGGUGACGa -3'
miRNA:   3'- aGUACaGCGGcAA-------------ACGGAGCCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 5161 0.69 0.633587
Target:  5'- aCA--UCGCCGaauuccagguugGCCUUGGCGACGu -3'
miRNA:   3'- aGUacAGCGGCaaa---------CGGAGCCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 47476 0.69 0.629305
Target:  5'- ---cGUCGCCGUggcGCgUUGGCgGGCGa -3'
miRNA:   3'- aguaCAGCGGCAaa-CGgAGCCG-CUGC- -5'
18314 3' -55.2 NC_004681.1 + 61270 0.71 0.513514
Target:  5'- ---cGUCGCCGUcgacccagUUGCCcugggcgucgCGGCGGCGu -3'
miRNA:   3'- aguaCAGCGGCA--------AACGGa---------GCCGCUGC- -5'
18314 3' -55.2 NC_004681.1 + 17925 0.66 0.830675
Target:  5'- -gGUGagGCCGg-UGCCUUGcGCGGCc -3'
miRNA:   3'- agUACagCGGCaaACGGAGC-CGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.