miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18315 3' -54.4 NC_004681.1 + 43583 1.13 0.000947
Target:  5'- gAGUCGCCAUUCAGCCACGCUCAACCCa -3'
miRNA:   3'- -UCAGCGGUAAGUCGGUGCGAGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 43665 0.77 0.252307
Target:  5'- -cUCGCCcUUCAGCC-CGCcgaUCAACCCc -3'
miRNA:   3'- ucAGCGGuAAGUCGGuGCG---AGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 50654 0.76 0.300574
Target:  5'- -uUCGCCAgccacagcUUCAGCgCGCGCUCAGCaaCCg -3'
miRNA:   3'- ucAGCGGU--------AAGUCG-GUGCGAGUUG--GG- -5'
18315 3' -54.4 NC_004681.1 + 10297 0.75 0.328053
Target:  5'- cGUCGCCAUUC-GCCucGCGCgcgaguaccagucCAACCCg -3'
miRNA:   3'- uCAGCGGUAAGuCGG--UGCGa------------GUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 40667 0.75 0.353169
Target:  5'- uGUCGCCGUuugccUCGGCgACGCUCGGugaguggcuccacuCCCu -3'
miRNA:   3'- uCAGCGGUA-----AGUCGgUGCGAGUU--------------GGG- -5'
18315 3' -54.4 NC_004681.1 + 70158 0.74 0.381367
Target:  5'- aAGUCugGCCGUUCgauugGGuCCACGCUCAugCUg -3'
miRNA:   3'- -UCAG--CGGUAAG-----UC-GGUGCGAGUugGG- -5'
18315 3' -54.4 NC_004681.1 + 37672 0.74 0.399172
Target:  5'- cGUgGCCGaUCA-CCACaGCUCGACCCc -3'
miRNA:   3'- uCAgCGGUaAGUcGGUG-CGAGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 50489 0.74 0.402796
Target:  5'- cAGUCGCCGUagucgugguagcggUAGCCGCcCUCGACCa -3'
miRNA:   3'- -UCAGCGGUAa-------------GUCGGUGcGAGUUGGg -5'
18315 3' -54.4 NC_004681.1 + 33855 0.72 0.485449
Target:  5'- cGGaaGCUcc-CAGCCGCGCUCGGCCg -3'
miRNA:   3'- -UCagCGGuaaGUCGGUGCGAGUUGGg -5'
18315 3' -54.4 NC_004681.1 + 20146 0.72 0.505826
Target:  5'- aGGUCGUCAUgcUCA-CCACGCU--GCCCc -3'
miRNA:   3'- -UCAGCGGUA--AGUcGGUGCGAguUGGG- -5'
18315 3' -54.4 NC_004681.1 + 55899 0.72 0.505826
Target:  5'- -aUCGaCCGUcagCAGCCGCuCUCGACCUa -3'
miRNA:   3'- ucAGC-GGUAa--GUCGGUGcGAGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 2080 0.72 0.516151
Target:  5'- ---gGCCAaUCAGCC-CGgaCAACCCg -3'
miRNA:   3'- ucagCGGUaAGUCGGuGCgaGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 65085 0.71 0.559295
Target:  5'- uGGUCGCCGaggUCGGCCugGCaaugauggaaggcGCCCu -3'
miRNA:   3'- -UCAGCGGUa--AGUCGGugCGagu----------UGGG- -5'
18315 3' -54.4 NC_004681.1 + 69773 0.71 0.568909
Target:  5'- aGGuUUGCCAg-CGGCCGCGCgCAcguACCCa -3'
miRNA:   3'- -UC-AGCGGUaaGUCGGUGCGaGU---UGGG- -5'
18315 3' -54.4 NC_004681.1 + 23827 0.7 0.57964
Target:  5'- ---aGUCGUUCAGUCAgGCaagauUCAGCCCa -3'
miRNA:   3'- ucagCGGUAAGUCGGUgCG-----AGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 62951 0.7 0.57964
Target:  5'- cGGUCGCgGUccuucUCGG-CGCGCUCGgugcGCCCc -3'
miRNA:   3'- -UCAGCGgUA-----AGUCgGUGCGAGU----UGGG- -5'
18315 3' -54.4 NC_004681.1 + 52978 0.7 0.590413
Target:  5'- uGUCGCCGcggcUCGGgCACGCgggCAGgCCg -3'
miRNA:   3'- uCAGCGGUa---AGUCgGUGCGa--GUUgGG- -5'
18315 3' -54.4 NC_004681.1 + 8983 0.7 0.612053
Target:  5'- -cUCGCUGUUCGgcGCCAC-CUCGGCCa -3'
miRNA:   3'- ucAGCGGUAAGU--CGGUGcGAGUUGGg -5'
18315 3' -54.4 NC_004681.1 + 15038 0.7 0.63376
Target:  5'- cGUCGCgCAggUCGGCacCAUGCUCGcgcagaugACCCa -3'
miRNA:   3'- uCAGCG-GUa-AGUCG--GUGCGAGU--------UGGG- -5'
18315 3' -54.4 NC_004681.1 + 19468 0.69 0.644616
Target:  5'- cGUCGCCca--GGCCGgugUGgUCGACCCg -3'
miRNA:   3'- uCAGCGGuaagUCGGU---GCgAGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.