miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18315 3' -54.4 NC_004681.1 + 28759 0.67 0.80027
Target:  5'- uGUCGCCAUggaguucgUGGCC-CaGCUCAAUCa -3'
miRNA:   3'- uCAGCGGUAa-------GUCGGuG-CGAGUUGGg -5'
18315 3' -54.4 NC_004681.1 + 15909 0.68 0.71973
Target:  5'- aAGaUCGCCGU--GGCCGCGgUCAagACCa -3'
miRNA:   3'- -UC-AGCGGUAagUCGGUGCgAGU--UGGg -5'
18315 3' -54.4 NC_004681.1 + 32170 0.68 0.730209
Target:  5'- aGGagGUCGUgaa--CACGCUCAACCCg -3'
miRNA:   3'- -UCagCGGUAagucgGUGCGAGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 49495 0.68 0.740592
Target:  5'- cAGUCGCCGgggUCcugcgcaaccaGGCCAUGgUCGACa- -3'
miRNA:   3'- -UCAGCGGUa--AG-----------UCGGUGCgAGUUGgg -5'
18315 3' -54.4 NC_004681.1 + 46080 0.67 0.760017
Target:  5'- aAGUCgGCCGcgaAGCCGCGCUCcucaacaAGCgCCu -3'
miRNA:   3'- -UCAG-CGGUaagUCGGUGCGAG-------UUG-GG- -5'
18315 3' -54.4 NC_004681.1 + 42428 0.67 0.761028
Target:  5'- cGUCGgCGcgCAGCC-UGCaCGACCCg -3'
miRNA:   3'- uCAGCgGUaaGUCGGuGCGaGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 59177 0.67 0.761028
Target:  5'- cGUCGCCAccuauGUCACGgaCGGCCUc -3'
miRNA:   3'- uCAGCGGUaagu-CGGUGCgaGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 17593 0.67 0.780949
Target:  5'- aAG-CGCCGUgguaucggcggcUCGGgCGCGgaCGACCCc -3'
miRNA:   3'- -UCaGCGGUA------------AGUCgGUGCgaGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 23272 0.67 0.780949
Target:  5'- uGG-CGUCGUUCAG--ACGCUCAuccaGCCCc -3'
miRNA:   3'- -UCaGCGGUAAGUCggUGCGAGU----UGGG- -5'
18315 3' -54.4 NC_004681.1 + 61793 0.68 0.71973
Target:  5'- cGUCGCCAaUCAGgaGCGC---ACCCa -3'
miRNA:   3'- uCAGCGGUaAGUCggUGCGaguUGGG- -5'
18315 3' -54.4 NC_004681.1 + 17708 0.68 0.71973
Target:  5'- cGGuUCGCCAgucgaCGGCCGCGgUCAAgCa -3'
miRNA:   3'- -UC-AGCGGUaa---GUCGGUGCgAGUUgGg -5'
18315 3' -54.4 NC_004681.1 + 70457 0.69 0.665204
Target:  5'- --cCGCCAUggugguccugCGGCCGCGCguagacgUCAGCCg -3'
miRNA:   3'- ucaGCGGUAa---------GUCGGUGCG-------AGUUGGg -5'
18315 3' -54.4 NC_004681.1 + 10297 0.75 0.328053
Target:  5'- cGUCGCCAUUC-GCCucGCGCgcgaguaccagucCAACCCg -3'
miRNA:   3'- uCAGCGGUAAGuCGG--UGCGa------------GUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 70158 0.74 0.381367
Target:  5'- aAGUCugGCCGUUCgauugGGuCCACGCUCAugCUg -3'
miRNA:   3'- -UCAG--CGGUAAG-----UC-GGUGCGAGUugGG- -5'
18315 3' -54.4 NC_004681.1 + 20146 0.72 0.505826
Target:  5'- aGGUCGUCAUgcUCA-CCACGCU--GCCCc -3'
miRNA:   3'- -UCAGCGGUA--AGUcGGUGCGAguUGGG- -5'
18315 3' -54.4 NC_004681.1 + 65085 0.71 0.559295
Target:  5'- uGGUCGCCGaggUCGGCCugGCaaugauggaaggcGCCCu -3'
miRNA:   3'- -UCAGCGGUa--AGUCGGugCGagu----------UGGG- -5'
18315 3' -54.4 NC_004681.1 + 69773 0.71 0.568909
Target:  5'- aGGuUUGCCAg-CGGCCGCGCgCAcguACCCa -3'
miRNA:   3'- -UC-AGCGGUaaGUCGGUGCGaGU---UGGG- -5'
18315 3' -54.4 NC_004681.1 + 23827 0.7 0.57964
Target:  5'- ---aGUCGUUCAGUCAgGCaagauUCAGCCCa -3'
miRNA:   3'- ucagCGGUAAGUCGGUgCG-----AGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 8983 0.7 0.612053
Target:  5'- -cUCGCUGUUCGgcGCCAC-CUCGGCCa -3'
miRNA:   3'- ucAGCGGUAAGU--CGGUGcGAGUUGGg -5'
18315 3' -54.4 NC_004681.1 + 15038 0.7 0.63376
Target:  5'- cGUCGCgCAggUCGGCacCAUGCUCGcgcagaugACCCa -3'
miRNA:   3'- uCAGCG-GUa-AGUCG--GUGCGAGU--------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.