miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18315 3' -54.4 NC_004681.1 + 1406 0.67 0.771058
Target:  5'- uGUCGgCGaggucgUCGGCCA-GCUCGuCCCa -3'
miRNA:   3'- uCAGCgGUa-----AGUCGGUgCGAGUuGGG- -5'
18315 3' -54.4 NC_004681.1 + 2080 0.72 0.516151
Target:  5'- ---gGCCAaUCAGCC-CGgaCAACCCg -3'
miRNA:   3'- ucagCGGUaAGUCGGuGCgaGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 2621 0.66 0.827944
Target:  5'- aAGUCGgggauuaCGUUCAcGCCGCGgaCGgcACCCu -3'
miRNA:   3'- -UCAGCg------GUAAGU-CGGUGCgaGU--UGGG- -5'
18315 3' -54.4 NC_004681.1 + 2634 0.69 0.666285
Target:  5'- -uUUGCCGUUCuuGCgCGCgaGCUCAAUCCa -3'
miRNA:   3'- ucAGCGGUAAGu-CG-GUG--CGAGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 2774 0.67 0.79069
Target:  5'- cAGUCGCgc--CAGUgACGCUCGgagacguaggagACCCg -3'
miRNA:   3'- -UCAGCGguaaGUCGgUGCGAGU------------UGGG- -5'
18315 3' -54.4 NC_004681.1 + 2872 0.66 0.83678
Target:  5'- -cUCGaCCGUgacgaAGCCccccuccCGCUCGACCCc -3'
miRNA:   3'- ucAGC-GGUAag---UCGGu------GCGAGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 5812 0.67 0.761028
Target:  5'- --aCuCCAUgagcgacaGGCCGCGCUcCAGCCCg -3'
miRNA:   3'- ucaGcGGUAag------UCGGUGCGA-GUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 7312 0.66 0.836779
Target:  5'- uGUCGCCGUUaccggcacCGGCCGCcuuCUCGaguACCUu -3'
miRNA:   3'- uCAGCGGUAA--------GUCGGUGc--GAGU---UGGG- -5'
18315 3' -54.4 NC_004681.1 + 8983 0.7 0.612053
Target:  5'- -cUCGCUGUUCGgcGCCAC-CUCGGCCa -3'
miRNA:   3'- ucAGCGGUAAGU--CGGUGcGAGUUGGg -5'
18315 3' -54.4 NC_004681.1 + 9894 0.68 0.719729
Target:  5'- -cUCGUCcucgacCAGCUugGCUuCAGCCCg -3'
miRNA:   3'- ucAGCGGuaa---GUCGGugCGA-GUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 9932 0.69 0.68783
Target:  5'- -uUCGCCuugCGGCCGCuGCggaCAACCUu -3'
miRNA:   3'- ucAGCGGuaaGUCGGUG-CGa--GUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 10021 0.66 0.825253
Target:  5'- cGUCGCCAUcgUggacccguacugcgGGUCAuCGCUCcuGCCCa -3'
miRNA:   3'- uCAGCGGUAa-G--------------UCGGU-GCGAGu-UGGG- -5'
18315 3' -54.4 NC_004681.1 + 10297 0.75 0.328053
Target:  5'- cGUCGCCAUUC-GCCucGCGCgcgaguaccagucCAACCCg -3'
miRNA:   3'- uCAGCGGUAAGuCGG--UGCGa------------GUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 10938 0.66 0.818907
Target:  5'- aGGUCGCaaucgCGGCgGCGaugUCAGCCUu -3'
miRNA:   3'- -UCAGCGguaa-GUCGgUGCg--AGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 12352 0.69 0.68783
Target:  5'- gAGUCgGCCAcagCaccgGGCCACccgaCUCAGCCCa -3'
miRNA:   3'- -UCAG-CGGUaa-G----UCGGUGc---GAGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 13414 0.66 0.844553
Target:  5'- -uUCGCCGUugUCGGCCucgaucuccAgGCUCGacagggcGCCCu -3'
miRNA:   3'- ucAGCGGUA--AGUCGG---------UgCGAGU-------UGGG- -5'
18315 3' -54.4 NC_004681.1 + 14345 0.67 0.80027
Target:  5'- --gCGCgGUucUCAGCC-CGCgUCAGCUCa -3'
miRNA:   3'- ucaGCGgUA--AGUCGGuGCG-AGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 14647 0.66 0.845406
Target:  5'- uGGUgGCgGUggCGGCgAUGC-CGACCCc -3'
miRNA:   3'- -UCAgCGgUAa-GUCGgUGCGaGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 15038 0.7 0.63376
Target:  5'- cGUCGCgCAggUCGGCacCAUGCUCGcgcagaugACCCa -3'
miRNA:   3'- uCAGCG-GUa-AGUCG--GUGCGAGU--------UGGG- -5'
18315 3' -54.4 NC_004681.1 + 15687 0.66 0.845406
Target:  5'- cGUCGCCGaaCAGUgacgagaaCACGgUCAugCCc -3'
miRNA:   3'- uCAGCGGUaaGUCG--------GUGCgAGUugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.