miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18334 5' -63.1 NC_004681.1 + 63052 1.08 0.000344
Target:  5'- cCGCCGCCGCCACCACCGCCGAAGGAGa -3'
miRNA:   3'- -GCGGCGGCGGUGGUGGCGGCUUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 44782 0.88 0.01249
Target:  5'- aCGCCGCCGUCGCCGuuGCCGucGAGGAGg -3'
miRNA:   3'- -GCGGCGGCGGUGGUggCGGC--UUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 27718 0.85 0.019377
Target:  5'- cCGCCGCCGCCGCCAgCGCCaccGAGGGuGa -3'
miRNA:   3'- -GCGGCGGCGGUGGUgGCGG---CUUCCuC- -5'
18334 5' -63.1 NC_004681.1 + 61667 0.83 0.02618
Target:  5'- aGCCGCCGCCgcggagGCCGCCGCCGAGGu-- -3'
miRNA:   3'- gCGGCGGCGG------UGGUGGCGGCUUCcuc -5'
18334 5' -63.1 NC_004681.1 + 7895 0.82 0.030835
Target:  5'- cCGCCGCCGCCuCCgaggaaGCCGCCG-AGGAGc -3'
miRNA:   3'- -GCGGCGGCGGuGG------UGGCGGCuUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 27859 0.8 0.04558
Target:  5'- cCGCCGCUGCCGCCGCUGCCGcgcgucaccgaauagGuGGAGc -3'
miRNA:   3'- -GCGGCGGCGGUGGUGGCGGC---------------UuCCUC- -5'
18334 5' -63.1 NC_004681.1 + 26895 0.79 0.053156
Target:  5'- gGCCGCCGCggugaaguugacagaACCACCGCCGAgcccgguaauGGGAGu -3'
miRNA:   3'- gCGGCGGCGg--------------UGGUGGCGGCU----------UCCUC- -5'
18334 5' -63.1 NC_004681.1 + 25297 0.79 0.054459
Target:  5'- uCGCCGCCGUUGCCAgCGCCGccAGGGGc -3'
miRNA:   3'- -GCGGCGGCGGUGGUgGCGGCu-UCCUC- -5'
18334 5' -63.1 NC_004681.1 + 14465 0.79 0.057467
Target:  5'- aCGCCGCgcgCGCCGCCuCCGCCGAgcAGGGc -3'
miRNA:   3'- -GCGGCG---GCGGUGGuGGCGGCU--UCCUc -5'
18334 5' -63.1 NC_004681.1 + 28241 0.77 0.071187
Target:  5'- uGCCGCCGCUcgauccGCCGCCGCCGuugcccgcGGGGc -3'
miRNA:   3'- gCGGCGGCGG------UGGUGGCGGCuu------CCUC- -5'
18334 5' -63.1 NC_004681.1 + 47105 0.77 0.081309
Target:  5'- aGCCGCCGCCGCUGagcgacgagaaCGCCGAGGGc- -3'
miRNA:   3'- gCGGCGGCGGUGGUg----------GCGGCUUCCuc -5'
18334 5' -63.1 NC_004681.1 + 18485 0.77 0.083492
Target:  5'- uGCCGCCGCgGCCGCCGCCu--GGc- -3'
miRNA:   3'- gCGGCGGCGgUGGUGGCGGcuuCCuc -5'
18334 5' -63.1 NC_004681.1 + 16455 0.76 0.085731
Target:  5'- gCGCCcucGUCGCCAcCCACCGCCGcAGcGGAGa -3'
miRNA:   3'- -GCGG---CGGCGGU-GGUGGCGGC-UU-CCUC- -5'
18334 5' -63.1 NC_004681.1 + 24940 0.76 0.095271
Target:  5'- gGCCGCCGCC-CgCGCCGCCGAcgccgaugAGGu- -3'
miRNA:   3'- gCGGCGGCGGuG-GUGGCGGCU--------UCCuc -5'
18334 5' -63.1 NC_004681.1 + 43704 0.75 0.105811
Target:  5'- cCGCCGCCGCaguaCACCGCCGCCcucGGuGa -3'
miRNA:   3'- -GCGGCGGCG----GUGGUGGCGGcuuCCuC- -5'
18334 5' -63.1 NC_004681.1 + 24979 0.75 0.111483
Target:  5'- gGUCGCCGCCcucGCCAUUGCUgguGAGGGAGc -3'
miRNA:   3'- gCGGCGGCGG---UGGUGGCGG---CUUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 30041 0.74 0.117439
Target:  5'- uCGCCGCCGCgGCCAUCGgCCuc-GGAGc -3'
miRNA:   3'- -GCGGCGGCGgUGGUGGC-GGcuuCCUC- -5'
18334 5' -63.1 NC_004681.1 + 16631 0.74 0.12369
Target:  5'- gGCCGCCguggggaccguuGCCGCCAcCCGCCaucuGGGAGu -3'
miRNA:   3'- gCGGCGG------------CGGUGGU-GGCGGcu--UCCUC- -5'
18334 5' -63.1 NC_004681.1 + 30350 0.74 0.12369
Target:  5'- aCGCCGUaccgGCCGCCGCCGCUGuGGcGGGc -3'
miRNA:   3'- -GCGGCGg---CGGUGGUGGCGGCuUC-CUC- -5'
18334 5' -63.1 NC_004681.1 + 28205 0.74 0.130248
Target:  5'- nGCCGUCGCUggucccguuguuGCCGCCGuuGAAGGu- -3'
miRNA:   3'- gCGGCGGCGG------------UGGUGGCggCUUCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.