miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18334 5' -63.1 NC_004681.1 + 2126 0.7 0.245578
Target:  5'- uGCgGCCGCCcuccacgaccaccugGCCGCgGCCGGAuGGGu -3'
miRNA:   3'- gCGgCGGCGG---------------UGGUGgCGGCUU-CCUc -5'
18334 5' -63.1 NC_004681.1 + 3013 0.66 0.433061
Target:  5'- uGCCGUCGCCcaGCCagGCCcccaggauguagggGUCGAgcGGGAGg -3'
miRNA:   3'- gCGGCGGCGG--UGG--UGG--------------CGGCU--UCCUC- -5'
18334 5' -63.1 NC_004681.1 + 3489 0.66 0.400023
Target:  5'- gCGCCGCgGCCAacuucucagacuuCCGCUGCaGgcGGAa -3'
miRNA:   3'- -GCGGCGgCGGU-------------GGUGGCGgCuuCCUc -5'
18334 5' -63.1 NC_004681.1 + 3911 0.66 0.418083
Target:  5'- gGuuGCCuCUACCACUGCCGGuaacgacaccgAGGGc -3'
miRNA:   3'- gCggCGGcGGUGGUGGCGGCU-----------UCCUc -5'
18334 5' -63.1 NC_004681.1 + 6354 0.68 0.300585
Target:  5'- gCGCUGCagcccuugggCGCCACgcccgauggCGCUGUCGAGGGGGa -3'
miRNA:   3'- -GCGGCG----------GCGGUG---------GUGGCGGCUUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 6526 0.67 0.384118
Target:  5'- aGCCGCggCGCCucaugcagaaGCCACCcCCcAAGGAGu -3'
miRNA:   3'- gCGGCG--GCGG----------UGGUGGcGGcUUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 7895 0.82 0.030835
Target:  5'- cCGCCGCCGCCuCCgaggaaGCCGCCG-AGGAGc -3'
miRNA:   3'- -GCGGCGGCGGuGG------UGGCGGCuUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 8716 0.66 0.444723
Target:  5'- --aCGCCGCCGCgGUCGCUGAAGccGGGa -3'
miRNA:   3'- gcgGCGGCGGUGgUGGCGGCUUC--CUC- -5'
18334 5' -63.1 NC_004681.1 + 9018 0.67 0.352034
Target:  5'- gGCCGUugaCGCCGggguacCCGCCGCCagccAGGAGc -3'
miRNA:   3'- gCGGCG---GCGGU------GGUGGCGGcu--UCCUC- -5'
18334 5' -63.1 NC_004681.1 + 9089 0.67 0.352034
Target:  5'- gGCCGCguCGUCACCGgCGCCGcuGGc- -3'
miRNA:   3'- gCGGCG--GCGGUGGUgGCGGCuuCCuc -5'
18334 5' -63.1 NC_004681.1 + 12596 0.66 0.444723
Target:  5'- uCGCCGuuGCUGCCuuCCGCggucaccuUGAAGGuGu -3'
miRNA:   3'- -GCGGCggCGGUGGu-GGCG--------GCUUCCuC- -5'
18334 5' -63.1 NC_004681.1 + 13021 0.69 0.289672
Target:  5'- gGCCGCgacugacacugucauCGCCGCCAUCGCCaagcuGGAa -3'
miRNA:   3'- gCGGCG---------------GCGGUGGUGGCGGcuu--CCUc -5'
18334 5' -63.1 NC_004681.1 + 13126 0.69 0.260652
Target:  5'- cCGCUGcCCGCCACCGCCcuucgugGCaCGgcGGGu -3'
miRNA:   3'- -GCGGC-GGCGGUGGUGG-------CG-GCuuCCUc -5'
18334 5' -63.1 NC_004681.1 + 14465 0.79 0.057467
Target:  5'- aCGCCGCgcgCGCCGCCuCCGCCGAgcAGGGc -3'
miRNA:   3'- -GCGGCG---GCGGUGGuGGCGGCU--UCCUc -5'
18334 5' -63.1 NC_004681.1 + 14555 0.73 0.148072
Target:  5'- uCGCCGCCaccGCCACCACgGCCGcAGu-- -3'
miRNA:   3'- -GCGGCGG---CGGUGGUGgCGGCuUCcuc -5'
18334 5' -63.1 NC_004681.1 + 14631 0.66 0.426855
Target:  5'- gCGCaucaagGUCGCCACCcguaUGCCGAuagAGGAGc -3'
miRNA:   3'- -GCGg-----CGGCGGUGGug--GCGGCU---UCCUC- -5'
18334 5' -63.1 NC_004681.1 + 14687 0.66 0.418083
Target:  5'- uCGCCaGCCaGCuUGCCGgUGCCGAAGGcGa -3'
miRNA:   3'- -GCGG-CGG-CG-GUGGUgGCGGCUUCCuC- -5'
18334 5' -63.1 NC_004681.1 + 16044 0.69 0.280381
Target:  5'- cCGCCGCUGUCACCGcauCCGCCGc----- -3'
miRNA:   3'- -GCGGCGGCGGUGGU---GGCGGCuuccuc -5'
18334 5' -63.1 NC_004681.1 + 16455 0.76 0.085731
Target:  5'- gCGCCcucGUCGCCAcCCACCGCCGcAGcGGAGa -3'
miRNA:   3'- -GCGG---CGGCGGU-GGUGGCGGC-UU-CCUC- -5'
18334 5' -63.1 NC_004681.1 + 16631 0.74 0.12369
Target:  5'- gGCCGCCguggggaccguuGCCGCCAcCCGCCaucuGGGAGu -3'
miRNA:   3'- gCGGCGG------------CGGUGGU-GGCGGcu--UCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.