miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18334 5' -63.1 NC_004681.1 + 57605 0.69 0.286993
Target:  5'- cCGuCCGCCGCCuacagucCCuCCGCCGAcuGGGc -3'
miRNA:   3'- -GC-GGCGGCGGu------GGuGGCGGCUucCUC- -5'
18334 5' -63.1 NC_004681.1 + 50826 0.71 0.195283
Target:  5'- cCGCCcaCCGCCACCcaGCuCGCCGAAG-AGg -3'
miRNA:   3'- -GCGGc-GGCGGUGG--UG-GCGGCUUCcUC- -5'
18334 5' -63.1 NC_004681.1 + 58651 0.71 0.210274
Target:  5'- gCGCCaCgGCCGCCugCGCCGcGGGc- -3'
miRNA:   3'- -GCGGcGgCGGUGGugGCGGCuUCCuc -5'
18334 5' -63.1 NC_004681.1 + 68924 0.7 0.231794
Target:  5'- gGCCGCCGCCACCGaaGacuuCGAguacgAGGAa -3'
miRNA:   3'- gCGGCGGCGGUGGUggCg---GCU-----UCCUc -5'
18334 5' -63.1 NC_004681.1 + 62423 0.7 0.25514
Target:  5'- gCGCCGacaCCGCCcucuCCGCCGCCc-AGGAa -3'
miRNA:   3'- -GCGGC---GGCGGu---GGUGGCGGcuUCCUc -5'
18334 5' -63.1 NC_004681.1 + 13126 0.69 0.260652
Target:  5'- cCGCUGcCCGCCACCGCCcuucgugGCaCGgcGGGu -3'
miRNA:   3'- -GCGGC-GGCGGUGGUGG-------CG-GCuuCCUc -5'
18334 5' -63.1 NC_004681.1 + 61762 0.69 0.26752
Target:  5'- aGaCCGCgGCCGCCAUCGgCC--AGGAGc -3'
miRNA:   3'- gC-GGCGgCGGUGGUGGC-GGcuUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 16044 0.69 0.280381
Target:  5'- cCGCCGCUGUCACCGcauCCGCCGc----- -3'
miRNA:   3'- -GCGGCGGCGGUGGU---GGCGGCuuccuc -5'
18334 5' -63.1 NC_004681.1 + 51516 0.69 0.286993
Target:  5'- -aCCGaCGCCACCACCuCCGAAG-AGg -3'
miRNA:   3'- gcGGCgGCGGUGGUGGcGGCUUCcUC- -5'
18334 5' -63.1 NC_004681.1 + 51319 0.71 0.195283
Target:  5'- cCGCCGaCGUCAUCACCGUCGccgcGGAGc -3'
miRNA:   3'- -GCGGCgGCGGUGGUGGCGGCuu--CCUC- -5'
18334 5' -63.1 NC_004681.1 + 63741 0.71 0.195283
Target:  5'- aCGgCGCCcucgguacGCCACCACCGaCUGAAcGGGGc -3'
miRNA:   3'- -GCgGCGG--------CGGUGGUGGC-GGCUU-CCUC- -5'
18334 5' -63.1 NC_004681.1 + 57804 0.72 0.185816
Target:  5'- gCGCCG-CGCCGCCGaggUGgCGAAGGAGc -3'
miRNA:   3'- -GCGGCgGCGGUGGUg--GCgGCUUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 7895 0.82 0.030835
Target:  5'- cCGCCGCCGCCuCCgaggaaGCCGCCG-AGGAGc -3'
miRNA:   3'- -GCGGCGGCGGuGG------UGGCGGCuUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 14465 0.79 0.057467
Target:  5'- aCGCCGCgcgCGCCGCCuCCGCCGAgcAGGGc -3'
miRNA:   3'- -GCGGCG---GCGGUGGuGGCGGCU--UCCUc -5'
18334 5' -63.1 NC_004681.1 + 47105 0.77 0.081309
Target:  5'- aGCCGCCGCCGCUGagcgacgagaaCGCCGAGGGc- -3'
miRNA:   3'- gCGGCGGCGGUGGUg----------GCGGCUUCCuc -5'
18334 5' -63.1 NC_004681.1 + 43704 0.75 0.105811
Target:  5'- cCGCCGCCGCaguaCACCGCCGCCcucGGuGa -3'
miRNA:   3'- -GCGGCGGCG----GUGGUGGCGGcuuCCuC- -5'
18334 5' -63.1 NC_004681.1 + 30041 0.74 0.117439
Target:  5'- uCGCCGCCGCgGCCAUCGgCCuc-GGAGc -3'
miRNA:   3'- -GCGGCGGCGgUGGUGGC-GGcuuCCUC- -5'
18334 5' -63.1 NC_004681.1 + 14555 0.73 0.148072
Target:  5'- uCGCCGCCaccGCCACCACgGCCGcAGu-- -3'
miRNA:   3'- -GCGGCGG---CGGUGGUGgCGGCuUCcuc -5'
18334 5' -63.1 NC_004681.1 + 65181 0.73 0.151893
Target:  5'- aCGCCGCCaagcGCCACCuggaCGCCugguGGGAGg -3'
miRNA:   3'- -GCGGCGG----CGGUGGug--GCGGcu--UCCUC- -5'
18334 5' -63.1 NC_004681.1 + 34742 0.72 0.185816
Target:  5'- gGCCGCCGCC-CC-UUGUCGAaguAGGGGg -3'
miRNA:   3'- gCGGCGGCGGuGGuGGCGGCU---UCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.