miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18338 3' -59.3 NC_004681.1 + 64318 1.13 0.000296
Target:  5'- aGCGGCCAUCCUCGCCCCAGACCAUGCg -3'
miRNA:   3'- -CGCCGGUAGGAGCGGGGUCUGGUACG- -5'
18338 3' -59.3 NC_004681.1 + 18373 0.68 0.493659
Target:  5'- uGCGGCCGUgC-CGCgCCCGGAgu-UGCc -3'
miRNA:   3'- -CGCCGGUAgGaGCG-GGGUCUgguACG- -5'
18338 3' -59.3 NC_004681.1 + 61310 0.67 0.513441
Target:  5'- uCGGCgG-CgUCGCgCCAGAUgGUGCa -3'
miRNA:   3'- cGCCGgUaGgAGCGgGGUCUGgUACG- -5'
18338 3' -59.3 NC_004681.1 + 6707 0.66 0.616157
Target:  5'- cGCGaaGCCcuugauGUCCUUGCCgCGGcCCAUGg -3'
miRNA:   3'- -CGC--CGG------UAGGAGCGGgGUCuGGUACg -5'
18338 3' -59.3 NC_004681.1 + 461 0.73 0.227899
Target:  5'- cGCgGGCuCGUCCUCGCggauggcgCCCAuGACgGUGCa -3'
miRNA:   3'- -CG-CCG-GUAGGAGCG--------GGGU-CUGgUACG- -5'
18338 3' -59.3 NC_004681.1 + 65756 0.72 0.270682
Target:  5'- cUGGUCGUUgUCGUCCCAGG-CGUGCu -3'
miRNA:   3'- cGCCGGUAGgAGCGGGGUCUgGUACG- -5'
18338 3' -59.3 NC_004681.1 + 18833 0.71 0.305043
Target:  5'- cGCGGCCucgccgCCgUCGCCCUuGGCgAUGUu -3'
miRNA:   3'- -CGCCGGua----GG-AGCGGGGuCUGgUACG- -5'
18338 3' -59.3 NC_004681.1 + 29518 0.7 0.365953
Target:  5'- -aGGCgA-CCUCGCCagugacgCCAGACCAcGCg -3'
miRNA:   3'- cgCCGgUaGGAGCGG-------GGUCUGGUaCG- -5'
18338 3' -59.3 NC_004681.1 + 18479 0.69 0.409503
Target:  5'- cGCGGCCGccgCCUgGCCU---GCCAUGUc -3'
miRNA:   3'- -CGCCGGUa--GGAgCGGGgucUGGUACG- -5'
18338 3' -59.3 NC_004681.1 + 54959 0.68 0.483899
Target:  5'- cGCGGUCGUCCUUGgCgUCAG-CCGgucGCa -3'
miRNA:   3'- -CGCCGGUAGGAGC-GgGGUCuGGUa--CG- -5'
18338 3' -59.3 NC_004681.1 + 11858 0.69 0.436583
Target:  5'- aGCGGCCAccggggaagUCCUCGCUCaGGAggGUGUc -3'
miRNA:   3'- -CGCCGGU---------AGGAGCGGGgUCUggUACG- -5'
18338 3' -59.3 NC_004681.1 + 64469 0.69 0.409503
Target:  5'- gGUGGCCAUUgUCGCCCac-GCCuUGUc -3'
miRNA:   3'- -CGCCGGUAGgAGCGGGgucUGGuACG- -5'
18338 3' -59.3 NC_004681.1 + 49117 0.75 0.186155
Target:  5'- -gGGCC-UCCUCGCCCUucuuGAUgGUGCc -3'
miRNA:   3'- cgCCGGuAGGAGCGGGGu---CUGgUACG- -5'
18338 3' -59.3 NC_004681.1 + 74825 0.69 0.436583
Target:  5'- cGCGGCCGga--UGCUCCAGugCuUGCa -3'
miRNA:   3'- -CGCCGGUaggaGCGGGGUCugGuACG- -5'
18338 3' -59.3 NC_004681.1 + 1392 0.75 0.190979
Target:  5'- uCGGCCAg-CUCGUCCCAGACUuccuggGCg -3'
miRNA:   3'- cGCCGGUagGAGCGGGGUCUGGua----CG- -5'
18338 3' -59.3 NC_004681.1 + 13102 0.7 0.375072
Target:  5'- cGCGGCCA-CgUCGUCCgCGGuGCCA-GCg -3'
miRNA:   3'- -CGCCGGUaGgAGCGGG-GUC-UGGUaCG- -5'
18338 3' -59.3 NC_004681.1 + 49681 0.68 0.452378
Target:  5'- uUGGCCcgCCUgaugcagucguuggUGCCUCGGGCC-UGCc -3'
miRNA:   3'- cGCCGGuaGGA--------------GCGGGGUCUGGuACG- -5'
18338 3' -59.3 NC_004681.1 + 9951 0.67 0.503508
Target:  5'- uGCGGUgggccgguuCGUCUUCGCCUUGcGGCCGcUGCg -3'
miRNA:   3'- -CGCCG---------GUAGGAGCGGGGU-CUGGU-ACG- -5'
18338 3' -59.3 NC_004681.1 + 53455 0.74 0.206115
Target:  5'- uGCGGaCCca-CUCGUCUgGGGCCAUGCg -3'
miRNA:   3'- -CGCC-GGuagGAGCGGGgUCUGGUACG- -5'
18338 3' -59.3 NC_004681.1 + 30942 0.72 0.274636
Target:  5'- gGCGuGCCGUCCUCcacgauggguccggGCagguaggCCCAGGCCGUGg -3'
miRNA:   3'- -CGC-CGGUAGGAG--------------CG-------GGGUCUGGUACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.