miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18344 5' -55.9 NC_004681.1 + 67376 1.1 0.001541
Target:  5'- uCCCCGUACACGACGGAGAACUCGGCGu -3'
miRNA:   3'- -GGGGCAUGUGCUGCCUCUUGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 24973 0.75 0.337948
Target:  5'- cCCCCG---GCGACGG-GGGCUCuGGCGg -3'
miRNA:   3'- -GGGGCaugUGCUGCCuCUUGAG-CCGC- -5'
18344 5' -55.9 NC_004681.1 + 46715 0.75 0.345799
Target:  5'- gCgUGUGCGgGGCGGGGucCUCGGCGa -3'
miRNA:   3'- gGgGCAUGUgCUGCCUCuuGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 13910 0.73 0.425799
Target:  5'- cCCCCGUACACGAUguugagcaagcgccgGGAcGAcaGCUUGGgGg -3'
miRNA:   3'- -GGGGCAUGUGCUG---------------CCU-CU--UGAGCCgC- -5'
18344 5' -55.9 NC_004681.1 + 13182 0.73 0.440478
Target:  5'- gCgCUGUACuagacaGCGGCGGcuucGAGCUCGGCGa -3'
miRNA:   3'- -GgGGCAUG------UGCUGCCu---CUUGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 61231 0.73 0.440478
Target:  5'- gUUCGUuggACACGACGGuGAAgUUGGCGa -3'
miRNA:   3'- gGGGCA---UGUGCUGCCuCUUgAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 25772 0.72 0.497932
Target:  5'- aCCCCGgACAUGcacuuuCGGAucGGCUCGGCGa -3'
miRNA:   3'- -GGGGCaUGUGCu-----GCCUc-UUGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 61858 0.71 0.517828
Target:  5'- aCUUCGUugACGGCGuGaAGAcuACUCGGUGg -3'
miRNA:   3'- -GGGGCAugUGCUGC-C-UCU--UGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 26243 0.71 0.546192
Target:  5'- cCCCCuacgcggugggGCAUGACGGAcucCUCGGCGg -3'
miRNA:   3'- -GGGGca---------UGUGCUGCCUcuuGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 29801 0.71 0.548238
Target:  5'- uUCCC--ACACcaGGCGcGGGAGCUCGGCa -3'
miRNA:   3'- -GGGGcaUGUG--CUGC-CUCUUGAGCCGc -5'
18344 5' -55.9 NC_004681.1 + 62352 0.71 0.548238
Target:  5'- cCCCCG-GCGCGGUGGAcGAAgacCUUGGCGa -3'
miRNA:   3'- -GGGGCaUGUGCUGCCU-CUU---GAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 45811 0.71 0.558502
Target:  5'- aCCuuGgagACGCGGCGcuGGuACUCGGCGa -3'
miRNA:   3'- -GGggCa--UGUGCUGCc-UCuUGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 41841 0.7 0.56882
Target:  5'- uUCCCGU-CGCGGuCGuAGAugUCGGUGg -3'
miRNA:   3'- -GGGGCAuGUGCU-GCcUCUugAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 54451 0.69 0.620968
Target:  5'- cCUCCGcaGCuACGACGGuGAGCgcagugUCGGCGa -3'
miRNA:   3'- -GGGGCa-UG-UGCUGCCuCUUG------AGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 28128 0.69 0.640895
Target:  5'- gCCCCGcggGCaacggcgGCGGCGGAucGAGCggCGGCa -3'
miRNA:   3'- -GGGGCa--UG-------UGCUGCCU--CUUGa-GCCGc -5'
18344 5' -55.9 NC_004681.1 + 13374 0.69 0.652424
Target:  5'- cCCUCGgACuCGAUGGccuggacgcGGAAUUCGGCGa -3'
miRNA:   3'- -GGGGCaUGuGCUGCC---------UCUUGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 62529 0.68 0.683727
Target:  5'- uUCCUGg--GCGGCGGAGAggGCggugUCGGCGc -3'
miRNA:   3'- -GGGGCaugUGCUGCCUCU--UG----AGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 14571 0.68 0.683727
Target:  5'- gCCC-UGCuCGGCGGAGGcggcGCgcgCGGCGu -3'
miRNA:   3'- gGGGcAUGuGCUGCCUCU----UGa--GCCGC- -5'
18344 5' -55.9 NC_004681.1 + 1245 0.68 0.694084
Target:  5'- uCCCC--AC-CGAUGGGGAACUCguGGCc -3'
miRNA:   3'- -GGGGcaUGuGCUGCCUCUUGAG--CCGc -5'
18344 5' -55.9 NC_004681.1 + 27904 0.68 0.694084
Target:  5'- aCUCGUccaguagcgGCACG-CGGGGc-CUCGGCGg -3'
miRNA:   3'- gGGGCA---------UGUGCuGCCUCuuGAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.