miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18344 5' -55.9 NC_004681.1 + 51333 0.66 0.828909
Target:  5'- -aCCGU-CGCcGCGGA--GCUCGGCa -3'
miRNA:   3'- ggGGCAuGUGcUGCCUcuUGAGCCGc -5'
18344 5' -55.9 NC_004681.1 + 33108 0.67 0.734872
Target:  5'- aCCUGUACGCacagaaccucGACGG-GAAgUCuGGCGa -3'
miRNA:   3'- gGGGCAUGUG----------CUGCCuCUUgAG-CCGC- -5'
18344 5' -55.9 NC_004681.1 + 9500 0.67 0.754743
Target:  5'- -aCCGUGCGCGcCGaAGAGCgccUCGGCc -3'
miRNA:   3'- ggGGCAUGUGCuGCcUCUUG---AGCCGc -5'
18344 5' -55.9 NC_004681.1 + 63184 0.67 0.754743
Target:  5'- aCCCUGaugucCGCGGCGGAGAucgggaagagGUUCGGCu -3'
miRNA:   3'- -GGGGCau---GUGCUGCCUCU----------UGAGCCGc -5'
18344 5' -55.9 NC_004681.1 + 21926 0.67 0.783673
Target:  5'- aCCCGUACACcauCGGgaAGGACcucuucgUGGCGg -3'
miRNA:   3'- gGGGCAUGUGcu-GCC--UCUUGa------GCCGC- -5'
18344 5' -55.9 NC_004681.1 + 58031 0.66 0.802262
Target:  5'- gCUCaaGCA-GACGGAGGAaUCGGCGg -3'
miRNA:   3'- gGGGcaUGUgCUGCCUCUUgAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 28415 0.66 0.811318
Target:  5'- aCCCCGgcuCcCG-CGGAGAuggaGCUCGcGUGg -3'
miRNA:   3'- -GGGGCau-GuGCuGCCUCU----UGAGC-CGC- -5'
18344 5' -55.9 NC_004681.1 + 16598 0.66 0.814893
Target:  5'- uCCCCGgucgACcugcaacugcaggccGCGAUGGAGg---CGGCGg -3'
miRNA:   3'- -GGGGCa---UG---------------UGCUGCCUCuugaGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 1269 0.66 0.828909
Target:  5'- cCCCCG-ACAUGuCGGAGGGCgcccaGGa- -3'
miRNA:   3'- -GGGGCaUGUGCuGCCUCUUGag---CCgc -5'
18344 5' -55.9 NC_004681.1 + 30432 0.68 0.714626
Target:  5'- aCCCGUAUguguACGGCGGGGcGCUCucGCc -3'
miRNA:   3'- gGGGCAUG----UGCUGCCUCuUGAGc-CGc -5'
18344 5' -55.9 NC_004681.1 + 72232 0.68 0.714626
Target:  5'- -aCCGUccGCGCGGCGGuugauGGACUCcacgauGGCGc -3'
miRNA:   3'- ggGGCA--UGUGCUGCCu----CUUGAG------CCGC- -5'
18344 5' -55.9 NC_004681.1 + 29847 0.68 0.704387
Target:  5'- cCCCUGUugGCGcgaauGCGGucaAGCUCGGUc -3'
miRNA:   3'- -GGGGCAugUGC-----UGCCuc-UUGAGCCGc -5'
18344 5' -55.9 NC_004681.1 + 25772 0.72 0.497932
Target:  5'- aCCCCGgACAUGcacuuuCGGAucGGCUCGGCGa -3'
miRNA:   3'- -GGGGCaUGUGCu-----GCCUc-UUGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 61858 0.71 0.517828
Target:  5'- aCUUCGUugACGGCGuGaAGAcuACUCGGUGg -3'
miRNA:   3'- -GGGGCAugUGCUGC-C-UCU--UGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 26243 0.71 0.546192
Target:  5'- cCCCCuacgcggugggGCAUGACGGAcucCUCGGCGg -3'
miRNA:   3'- -GGGGca---------UGUGCUGCCUcuuGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 29801 0.71 0.548238
Target:  5'- uUCCC--ACACcaGGCGcGGGAGCUCGGCa -3'
miRNA:   3'- -GGGGcaUGUG--CUGC-CUCUUGAGCCGc -5'
18344 5' -55.9 NC_004681.1 + 54451 0.69 0.620968
Target:  5'- cCUCCGcaGCuACGACGGuGAGCgcagugUCGGCGa -3'
miRNA:   3'- -GGGGCa-UG-UGCUGCCuCUUG------AGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 28128 0.69 0.640895
Target:  5'- gCCCCGcggGCaacggcgGCGGCGGAucGAGCggCGGCa -3'
miRNA:   3'- -GGGGCa--UG-------UGCUGCCU--CUUGa-GCCGc -5'
18344 5' -55.9 NC_004681.1 + 27904 0.68 0.694084
Target:  5'- aCUCGUccaguagcgGCACG-CGGGGc-CUCGGCGg -3'
miRNA:   3'- gGGGCA---------UGUGCuGCCUCuuGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 1245 0.68 0.694084
Target:  5'- uCCCC--AC-CGAUGGGGAACUCguGGCc -3'
miRNA:   3'- -GGGGcaUGuGCUGCCUCUUGAG--CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.