miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18344 5' -55.9 NC_004681.1 + 1245 0.68 0.694084
Target:  5'- uCCCC--AC-CGAUGGGGAACUCguGGCc -3'
miRNA:   3'- -GGGGcaUGuGCUGCCUCUUGAG--CCGc -5'
18344 5' -55.9 NC_004681.1 + 1269 0.66 0.828909
Target:  5'- cCCCCG-ACAUGuCGGAGGGCgcccaGGa- -3'
miRNA:   3'- -GGGGCaUGUGCuGCCUCUUGag---CCgc -5'
18344 5' -55.9 NC_004681.1 + 7381 0.67 0.77416
Target:  5'- gCUCGU-CGCaGGCGGcGcACUCGGCGc -3'
miRNA:   3'- gGGGCAuGUG-CUGCCuCuUGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 9234 0.66 0.837427
Target:  5'- aCCC--GCGCGACuGGGAGCUCcuGCGc -3'
miRNA:   3'- gGGGcaUGUGCUGcCUCUUGAGc-CGC- -5'
18344 5' -55.9 NC_004681.1 + 9500 0.67 0.754743
Target:  5'- -aCCGUGCGCGcCGaAGAGCgccUCGGCc -3'
miRNA:   3'- ggGGCAUGUGCuGCcUCUUG---AGCCGc -5'
18344 5' -55.9 NC_004681.1 + 13182 0.73 0.440478
Target:  5'- gCgCUGUACuagacaGCGGCGGcuucGAGCUCGGCGa -3'
miRNA:   3'- -GgGGCAUG------UGCUGCCu---CUUGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 13374 0.69 0.652424
Target:  5'- cCCUCGgACuCGAUGGccuggacgcGGAAUUCGGCGa -3'
miRNA:   3'- -GGGGCaUGuGCUGCC---------UCUUGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 13910 0.73 0.425799
Target:  5'- cCCCCGUACACGAUguugagcaagcgccgGGAcGAcaGCUUGGgGg -3'
miRNA:   3'- -GGGGCAUGUGCUG---------------CCU-CU--UGAGCCgC- -5'
18344 5' -55.9 NC_004681.1 + 14571 0.68 0.683727
Target:  5'- gCCC-UGCuCGGCGGAGGcggcGCgcgCGGCGu -3'
miRNA:   3'- gGGGcAUGuGCUGCCUCU----UGa--GCCGC- -5'
18344 5' -55.9 NC_004681.1 + 16440 0.67 0.764513
Target:  5'- cCCaCCGc-CGCaGCGGAGAuggccuGCUCGGCu -3'
miRNA:   3'- -GG-GGCauGUGcUGCCUCU------UGAGCCGc -5'
18344 5' -55.9 NC_004681.1 + 16598 0.66 0.814893
Target:  5'- uCCCCGgucgACcugcaacugcaggccGCGAUGGAGg---CGGCGg -3'
miRNA:   3'- -GGGGCa---UG---------------UGCUGCCUCuugaGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 19987 0.67 0.782728
Target:  5'- gCCCGguguaGCGAUGGucuucguccauguAGGACUCGGUc -3'
miRNA:   3'- gGGGCaug--UGCUGCC-------------UCUUGAGCCGc -5'
18344 5' -55.9 NC_004681.1 + 21926 0.67 0.783673
Target:  5'- aCCCGUACACcauCGGgaAGGACcucuucgUGGCGg -3'
miRNA:   3'- gGGGCAUGUGcu-GCC--UCUUGa------GCCGC- -5'
18344 5' -55.9 NC_004681.1 + 24973 0.75 0.337948
Target:  5'- cCCCCG---GCGACGG-GGGCUCuGGCGg -3'
miRNA:   3'- -GGGGCaugUGCUGCCuCUUGAG-CCGC- -5'
18344 5' -55.9 NC_004681.1 + 25772 0.72 0.497932
Target:  5'- aCCCCGgACAUGcacuuuCGGAucGGCUCGGCGa -3'
miRNA:   3'- -GGGGCaUGUGCu-----GCCUc-UUGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 26243 0.71 0.546192
Target:  5'- cCCCCuacgcggugggGCAUGACGGAcucCUCGGCGg -3'
miRNA:   3'- -GGGGca---------UGUGCUGCCUcuuGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 27057 0.66 0.811318
Target:  5'- cCCCCGUuccCGCGuuGG-GAAUUCGGa- -3'
miRNA:   3'- -GGGGCAu--GUGCugCCuCUUGAGCCgc -5'
18344 5' -55.9 NC_004681.1 + 27904 0.68 0.694084
Target:  5'- aCUCGUccaguagcgGCACG-CGGGGc-CUCGGCGg -3'
miRNA:   3'- gGGGCA---------UGUGCuGCCUCuuGAGCCGC- -5'
18344 5' -55.9 NC_004681.1 + 28128 0.69 0.640895
Target:  5'- gCCCCGcggGCaacggcgGCGGCGGAucGAGCggCGGCa -3'
miRNA:   3'- -GGGGCa--UG-------UGCUGCCU--CUUGa-GCCGc -5'
18344 5' -55.9 NC_004681.1 + 28415 0.66 0.811318
Target:  5'- aCCCCGgcuCcCG-CGGAGAuggaGCUCGcGUGg -3'
miRNA:   3'- -GGGGCau-GuGCuGCCUCU----UGAGC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.