miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18345 5' -58.9 NC_004681.1 + 68627 1.11 0.000551
Target:  5'- gGGAGAACCACCGGCAUGGCGCCCAGGc -3'
miRNA:   3'- -CCUCUUGGUGGCCGUACCGCGGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 18296 0.81 0.07996
Target:  5'- cGGGGGugCGCCGGgA-GGCGCuCCAGGa -3'
miRNA:   3'- -CCUCUugGUGGCCgUaCCGCG-GGUCC- -5'
18345 5' -58.9 NC_004681.1 + 6465 0.78 0.116578
Target:  5'- -cAGcGCCAUCgGGCGUGGCGCCCAaGGg -3'
miRNA:   3'- ccUCuUGGUGG-CCGUACCGCGGGU-CC- -5'
18345 5' -58.9 NC_004681.1 + 3148 0.76 0.177262
Target:  5'- aGGAcuGCCACCaGGCccuUGGCGCCgCGGGu -3'
miRNA:   3'- -CCUcuUGGUGG-CCGu--ACCGCGG-GUCC- -5'
18345 5' -58.9 NC_004681.1 + 26583 0.75 0.201355
Target:  5'- cGAGAACUcgcagaguACCGGCAccaacggcguUGGCGUCCAGa -3'
miRNA:   3'- cCUCUUGG--------UGGCCGU----------ACCGCGGGUCc -5'
18345 5' -58.9 NC_004681.1 + 28610 0.74 0.228245
Target:  5'- uGGAGAugACCGCgGG---GGUGCCCGGGg -3'
miRNA:   3'- -CCUCU--UGGUGgCCguaCCGCGGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 24163 0.74 0.239825
Target:  5'- -cGGcGCCACCGacaAUGGCGUCCAGGa -3'
miRNA:   3'- ccUCuUGGUGGCcg-UACCGCGGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 60127 0.73 0.257482
Target:  5'- cGGGAGCCGCCGaaggcgaGCA-GGUGCCCAccGGg -3'
miRNA:   3'- cCUCUUGGUGGC-------CGUaCCGCGGGU--CC- -5'
18345 5' -58.9 NC_004681.1 + 27575 0.73 0.270922
Target:  5'- cGAcGAGCCgguACCGGCAggcaccacaGGCGCCUGGGu -3'
miRNA:   3'- cCU-CUUGG---UGGCCGUa--------CCGCGGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 1255 0.73 0.282211
Target:  5'- uGGGGAACuCGuggcccccgacaugUCGGag-GGCGCCCAGGa -3'
miRNA:   3'- -CCUCUUG-GU--------------GGCCguaCCGCGGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 51583 0.72 0.298073
Target:  5'- uGGAGcAAcCCACCGGCAacgGGCucggcuucGCCCAGc -3'
miRNA:   3'- -CCUC-UU-GGUGGCCGUa--CCG--------CGGGUCc -5'
18345 5' -58.9 NC_004681.1 + 12312 0.71 0.342669
Target:  5'- --cGGGCCACCGGgGaugcGGCGCgCGGGg -3'
miRNA:   3'- ccuCUUGGUGGCCgUa---CCGCGgGUCC- -5'
18345 5' -58.9 NC_004681.1 + 31919 0.7 0.383366
Target:  5'- uGGAGuGCCugCGGauugaccuUGGCGaCCCAGu -3'
miRNA:   3'- -CCUCuUGGugGCCgu------ACCGC-GGGUCc -5'
18345 5' -58.9 NC_004681.1 + 64756 0.7 0.383366
Target:  5'- uGGcGGGAUCGuCCGGUAUGGCGaUCUGGGu -3'
miRNA:   3'- -CC-UCUUGGU-GGCCGUACCGC-GGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 41167 0.7 0.400519
Target:  5'- cGGuGAGCaCAUCGGCGgcGGCGCCgaagAGGg -3'
miRNA:   3'- -CCuCUUG-GUGGCCGUa-CCGCGGg---UCC- -5'
18345 5' -58.9 NC_004681.1 + 23331 0.7 0.409278
Target:  5'- uGGGccACCucuuCCGGCAgcuucaGGCGCCCgAGGu -3'
miRNA:   3'- -CCUcuUGGu---GGCCGUa-----CCGCGGG-UCC- -5'
18345 5' -58.9 NC_004681.1 + 17963 0.69 0.427147
Target:  5'- uGGAGGuCCuccagagugaacGCCGG---GGCGCCCGGGu -3'
miRNA:   3'- -CCUCUuGG------------UGGCCguaCCGCGGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 69608 0.69 0.454795
Target:  5'- aGuGAGCacaCGGCGUGGCGCaccucgcgcaCCAGGa -3'
miRNA:   3'- cCuCUUGgugGCCGUACCGCG----------GGUCC- -5'
18345 5' -58.9 NC_004681.1 + 62518 0.69 0.454795
Target:  5'- cGGAGAG--GgCGGUGUcGGCGCCCAGc -3'
miRNA:   3'- -CCUCUUggUgGCCGUA-CCGCGGGUCc -5'
18345 5' -58.9 NC_004681.1 + 18616 0.69 0.468026
Target:  5'- gGGAGAacACCGCUGGCAagacgacgccaccccUGaaGCCCgAGGa -3'
miRNA:   3'- -CCUCU--UGGUGGCCGU---------------ACcgCGGG-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.