miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18345 5' -58.9 NC_004681.1 + 471 0.67 0.542944
Target:  5'- aGGucuuGACCGCgGGCucguccucgcggAUGGCGCCCAu- -3'
miRNA:   3'- -CCuc--UUGGUGgCCG------------UACCGCGGGUcc -5'
18345 5' -58.9 NC_004681.1 + 705 0.68 0.532829
Target:  5'- cGGAGGAaguucUCGaCGGCGucgaUGGCGCCCugaAGGa -3'
miRNA:   3'- -CCUCUU-----GGUgGCCGU----ACCGCGGG---UCC- -5'
18345 5' -58.9 NC_004681.1 + 1255 0.73 0.282211
Target:  5'- uGGGGAACuCGuggcccccgacaugUCGGag-GGCGCCCAGGa -3'
miRNA:   3'- -CCUCUUG-GU--------------GGCCguaCCGCGGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 1413 0.68 0.50193
Target:  5'- uGAuGGGCCACgaauacaCGGCcauUGGCGCCgCGGGc -3'
miRNA:   3'- cCU-CUUGGUG-------GCCGu--ACCGCGG-GUCC- -5'
18345 5' -58.9 NC_004681.1 + 3148 0.76 0.177262
Target:  5'- aGGAcuGCCACCaGGCccuUGGCGCCgCGGGu -3'
miRNA:   3'- -CCUcuUGGUGG-CCGu--ACCGCGG-GUCC- -5'
18345 5' -58.9 NC_004681.1 + 3858 0.68 0.483384
Target:  5'- -uGGGACUcgcuccgaACCGGUAUGG-GCUCAGGu -3'
miRNA:   3'- ccUCUUGG--------UGGCCGUACCgCGGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 6465 0.78 0.116578
Target:  5'- -cAGcGCCAUCgGGCGUGGCGCCCAaGGg -3'
miRNA:   3'- ccUCuUGGUGG-CCGUACCGCGGGU-CC- -5'
18345 5' -58.9 NC_004681.1 + 6512 0.67 0.563356
Target:  5'- aGGAGuGCUgGCCGGUcgcuucGGCGCCgGGGc -3'
miRNA:   3'- -CCUCuUGG-UGGCCGua----CCGCGGgUCC- -5'
18345 5' -58.9 NC_004681.1 + 7446 0.68 0.500946
Target:  5'- gGGAGGcuucGCCGCggCGGCGgggucagccccgGGUGCCgGGGg -3'
miRNA:   3'- -CCUCU----UGGUG--GCCGUa-----------CCGCGGgUCC- -5'
18345 5' -58.9 NC_004681.1 + 9457 0.66 0.635991
Target:  5'- -nGGGAUCAgCGGgGUGGUGacaaCCGGGa -3'
miRNA:   3'- ccUCUUGGUgGCCgUACCGCg---GGUCC- -5'
18345 5' -58.9 NC_004681.1 + 9482 0.67 0.563356
Target:  5'- aGuGGcCCACCaGgAUGGUGCCCAGcGg -3'
miRNA:   3'- cCuCUuGGUGGcCgUACCGCGGGUC-C- -5'
18345 5' -58.9 NC_004681.1 + 10313 0.66 0.635991
Target:  5'- cGGGGAGCCaggGCCaGGUGUGGCcgguGCuccacucggagCCGGGg -3'
miRNA:   3'- -CCUCUUGG---UGG-CCGUACCG----CG-----------GGUCC- -5'
18345 5' -58.9 NC_004681.1 + 10759 0.68 0.532829
Target:  5'- cGAcGGCCGCgGGCAccgGGgGCgCCAGGc -3'
miRNA:   3'- cCUcUUGGUGgCCGUa--CCgCG-GGUCC- -5'
18345 5' -58.9 NC_004681.1 + 12312 0.71 0.342669
Target:  5'- --cGGGCCACCGGgGaugcGGCGCgCGGGg -3'
miRNA:   3'- ccuCUUGGUGGCCgUa---CCGCGgGUCC- -5'
18345 5' -58.9 NC_004681.1 + 13692 0.66 0.60472
Target:  5'- uGGAcg-UCAUUGGCGUGGCcGCCCGcGGc -3'
miRNA:   3'- -CCUcuuGGUGGCCGUACCG-CGGGU-CC- -5'
18345 5' -58.9 NC_004681.1 + 14780 0.66 0.615134
Target:  5'- cGGAcgcccuGGCCAUCcugaaGGC-UGGCGCCCAGc -3'
miRNA:   3'- -CCUc-----UUGGUGG-----CCGuACCGCGGGUCc -5'
18345 5' -58.9 NC_004681.1 + 15053 0.67 0.553122
Target:  5'- aGAGAGCCcaugaGCUGGUcgaugGGCGCCUuGGc -3'
miRNA:   3'- cCUCUUGG-----UGGCCGua---CCGCGGGuCC- -5'
18345 5' -58.9 NC_004681.1 + 15831 0.67 0.583966
Target:  5'- aGGAGugcAUCGCagaGuGCGUGGCGUCCAa- -3'
miRNA:   3'- -CCUCu--UGGUGg--C-CGUACCGCGGGUcc -5'
18345 5' -58.9 NC_004681.1 + 16481 0.66 0.634948
Target:  5'- uGGAGGugGCCGa-GGCAacccacuUGGCGCCCu-- -3'
miRNA:   3'- -CCUCU--UGGUggCCGU-------ACCGCGGGucc -5'
18345 5' -58.9 NC_004681.1 + 16482 0.66 0.615134
Target:  5'- --cGGACUACuCGGCGccGCGCCCcGGc -3'
miRNA:   3'- ccuCUUGGUG-GCCGUacCGCGGGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.