miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18345 5' -58.9 NC_004681.1 + 21413 0.66 0.635991
Target:  5'- aGGAGAGCguCCugGGCAaggugcUGGCGCCg--- -3'
miRNA:   3'- -CCUCUUGguGG--CCGU------ACCGCGGgucc -5'
18345 5' -58.9 NC_004681.1 + 42504 0.67 0.542944
Target:  5'- cGAGcccGACCGCUGGCAggaauGCGCCCccGGc -3'
miRNA:   3'- cCUC---UUGGUGGCCGUac---CGCGGGu-CC- -5'
18345 5' -58.9 NC_004681.1 + 56139 0.67 0.552101
Target:  5'- uGGAGAACCACCGccGCAUcaaGGCGaugaagcUCCGcGGc -3'
miRNA:   3'- -CCUCUUGGUGGC--CGUA---CCGC-------GGGU-CC- -5'
18345 5' -58.9 NC_004681.1 + 25214 0.67 0.580864
Target:  5'- cGGcGGcGACCGCuucuucaacaacggCGGcCAUGGCGCCCGcGGc -3'
miRNA:   3'- -CC-UC-UUGGUG--------------GCC-GUACCGCGGGU-CC- -5'
18345 5' -58.9 NC_004681.1 + 62567 0.67 0.583966
Target:  5'- aGGAGAuggaaCGCCGGgAgcGCGCCgAGGc -3'
miRNA:   3'- -CCUCUug---GUGGCCgUacCGCGGgUCC- -5'
18345 5' -58.9 NC_004681.1 + 18482 0.67 0.594329
Target:  5'- cGGuG-GCCAgcugaUCGGUAUcGGCGCCgAGGg -3'
miRNA:   3'- -CCuCuUGGU-----GGCCGUA-CCGCGGgUCC- -5'
18345 5' -58.9 NC_004681.1 + 16482 0.66 0.615134
Target:  5'- --cGGACUACuCGGCGccGCGCCCcGGc -3'
miRNA:   3'- ccuCUUGGUG-GCCGUacCGCGGGuCC- -5'
18345 5' -58.9 NC_004681.1 + 14780 0.66 0.615134
Target:  5'- cGGAcgcccuGGCCAUCcugaaGGC-UGGCGCCCAGc -3'
miRNA:   3'- -CCUc-----UUGGUGG-----CCGuACCGCGGGUCc -5'
18345 5' -58.9 NC_004681.1 + 24522 0.66 0.634948
Target:  5'- cGAG-AUCACCgaGGCAuacgccuacgagcUGGUGCCCGuGGg -3'
miRNA:   3'- cCUCuUGGUGG--CCGU-------------ACCGCGGGU-CC- -5'
18345 5' -58.9 NC_004681.1 + 27204 0.68 0.522782
Target:  5'- cGGGcGAAguaCACCGGCGUcGCGCCCcuccuGGc -3'
miRNA:   3'- -CCU-CUUg--GUGGCCGUAcCGCGGGu----CC- -5'
18345 5' -58.9 NC_004681.1 + 55555 0.68 0.512809
Target:  5'- -cGGAAUCACCGGC-UGGgGCCUu-- -3'
miRNA:   3'- ccUCUUGGUGGCCGuACCgCGGGucc -5'
18345 5' -58.9 NC_004681.1 + 40116 0.68 0.502915
Target:  5'- cGGGggUCGCCaGGUcgGugacCGCCCGGGa -3'
miRNA:   3'- cCUCuuGGUGG-CCGuaCc---GCGGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 27575 0.73 0.270922
Target:  5'- cGAcGAGCCgguACCGGCAggcaccacaGGCGCCUGGGu -3'
miRNA:   3'- cCU-CUUGG---UGGCCGUa--------CCGCGGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 1255 0.73 0.282211
Target:  5'- uGGGGAACuCGuggcccccgacaugUCGGag-GGCGCCCAGGa -3'
miRNA:   3'- -CCUCUUG-GU--------------GGCCguaCCGCGGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 51583 0.72 0.298073
Target:  5'- uGGAGcAAcCCACCGGCAacgGGCucggcuucGCCCAGc -3'
miRNA:   3'- -CCUC-UU-GGUGGCCGUa--CCG--------CGGGUCc -5'
18345 5' -58.9 NC_004681.1 + 23331 0.7 0.409278
Target:  5'- uGGGccACCucuuCCGGCAgcuucaGGCGCCCgAGGu -3'
miRNA:   3'- -CCUcuUGGu---GGCCGUa-----CCGCGGG-UCC- -5'
18345 5' -58.9 NC_004681.1 + 18616 0.69 0.468026
Target:  5'- gGGAGAacACCGCUGGCAagacgacgccaccccUGaaGCCCgAGGa -3'
miRNA:   3'- -CCUCU--UGGUGGCCGU---------------ACcgCGGG-UCC- -5'
18345 5' -58.9 NC_004681.1 + 3858 0.68 0.483384
Target:  5'- -uGGGACUcgcuccgaACCGGUAUGG-GCUCAGGu -3'
miRNA:   3'- ccUCUUGG--------UGGCCGUACCgCGGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 17289 0.68 0.483384
Target:  5'- cGGAGAcgacGCCcuGCUGGCGcGcGUGCCCGcGGg -3'
miRNA:   3'- -CCUCU----UGG--UGGCCGUaC-CGCGGGU-CC- -5'
18345 5' -58.9 NC_004681.1 + 1413 0.68 0.50193
Target:  5'- uGAuGGGCCACgaauacaCGGCcauUGGCGCCgCGGGc -3'
miRNA:   3'- cCU-CUUGGUG-------GCCGu--ACCGCGG-GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.