miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18386 5' -56.7 NC_004681.1 + 46863 0.66 0.74537
Target:  5'- -gUGACGccgugCGCGCgcagCGCCGGUccCACc -3'
miRNA:   3'- cgACUGCa----GCGCGa---GUGGCCGauGUG- -5'
18386 5' -56.7 NC_004681.1 + 16675 0.66 0.74537
Target:  5'- uGCUGGCGaCgGCGCUCcgagcACCGGCc---- -3'
miRNA:   3'- -CGACUGCaG-CGCGAG-----UGGCCGaugug -5'
18386 5' -56.7 NC_004681.1 + 45910 0.66 0.724984
Target:  5'- cGCUGGCGUauaUGCacaGCUauUCGGCUAUGCa -3'
miRNA:   3'- -CGACUGCA---GCG---CGAguGGCCGAUGUG- -5'
18386 5' -56.7 NC_004681.1 + 39315 0.66 0.724984
Target:  5'- cCUG-CG-CGCGCggCGCCGcGCUggACACg -3'
miRNA:   3'- cGACuGCaGCGCGa-GUGGC-CGA--UGUG- -5'
18386 5' -56.7 NC_004681.1 + 57881 0.66 0.724984
Target:  5'- cGC-GugGUCGCGgUCuCCGGUgGCGg -3'
miRNA:   3'- -CGaCugCAGCGCgAGuGGCCGaUGUg -5'
18386 5' -56.7 NC_004681.1 + 56095 0.66 0.721893
Target:  5'- cUUGGCGUCGCGCUgCgugagggccuggcaGCCGaGCaccgGCACc -3'
miRNA:   3'- cGACUGCAGCGCGA-G--------------UGGC-CGa---UGUG- -5'
18386 5' -56.7 NC_004681.1 + 32693 0.66 0.714655
Target:  5'- cGCcGACGUCGCGCg-GCUGGUg---- -3'
miRNA:   3'- -CGaCUGCAGCGCGagUGGCCGaugug -5'
18386 5' -56.7 NC_004681.1 + 16149 0.66 0.714655
Target:  5'- cGCUGGCGgccauccCGuCGCUCAUCGcGCUGu-- -3'
miRNA:   3'- -CGACUGCa------GC-GCGAGUGGC-CGAUgug -5'
18386 5' -56.7 NC_004681.1 + 40475 0.66 0.714655
Target:  5'- cGCUGGCGgUGcCGCUCuuGCUGGCgguguuCACc -3'
miRNA:   3'- -CGACUGCaGC-GCGAG--UGGCCGau----GUG- -5'
18386 5' -56.7 NC_004681.1 + 54560 0.66 0.704249
Target:  5'- cGCcGACacUGCGCUCACCGucguaGCUGCGg -3'
miRNA:   3'- -CGaCUGcaGCGCGAGUGGC-----CGAUGUg -5'
18386 5' -56.7 NC_004681.1 + 10761 0.66 0.704249
Target:  5'- cGC-GACGgcCGCGggCACCGGggGCGCc -3'
miRNA:   3'- -CGaCUGCa-GCGCgaGUGGCCgaUGUG- -5'
18386 5' -56.7 NC_004681.1 + 20142 0.67 0.693778
Target:  5'- gGCcagGuCGUCaUGCUCAccacgcugccCCGGCUGCGCu -3'
miRNA:   3'- -CGa--CuGCAGcGCGAGU----------GGCCGAUGUG- -5'
18386 5' -56.7 NC_004681.1 + 56615 0.67 0.691677
Target:  5'- gGUUGACGagGCGCUCcagccacuucuuCUGGCguaGCACc -3'
miRNA:   3'- -CGACUGCagCGCGAGu-----------GGCCGa--UGUG- -5'
18386 5' -56.7 NC_004681.1 + 8930 0.67 0.690625
Target:  5'- --cGGCGUCaacggccugcugcaGCGUUCgACCGGCUuCACc -3'
miRNA:   3'- cgaCUGCAG--------------CGCGAG-UGGCCGAuGUG- -5'
18386 5' -56.7 NC_004681.1 + 10378 0.67 0.672678
Target:  5'- gGC-GACGUCGaucaGCUCAuCCGGCa---- -3'
miRNA:   3'- -CGaCUGCAGCg---CGAGU-GGCCGaugug -5'
18386 5' -56.7 NC_004681.1 + 14427 0.67 0.651435
Target:  5'- cUUGGCG-CGCaGCUCAUUGGCccGCGCc -3'
miRNA:   3'- cGACUGCaGCG-CGAGUGGCCGa-UGUG- -5'
18386 5' -56.7 NC_004681.1 + 27191 0.67 0.65037
Target:  5'- --aGGCG-CGCGCUaccgggcgaaguaCACCGGCgucGCGCc -3'
miRNA:   3'- cgaCUGCaGCGCGA-------------GUGGCCGa--UGUG- -5'
18386 5' -56.7 NC_004681.1 + 40151 0.68 0.630125
Target:  5'- uGCUGGCGUCGgccUGCgggAUCGGCUuCGCc -3'
miRNA:   3'- -CGACUGCAGC---GCGag-UGGCCGAuGUG- -5'
18386 5' -56.7 NC_004681.1 + 51583 0.68 0.630125
Target:  5'- aGCUGGCGgcaGCGgUCGCCcaguucgaugaGGCgACGCu -3'
miRNA:   3'- -CGACUGCag-CGCgAGUGG-----------CCGaUGUG- -5'
18386 5' -56.7 NC_004681.1 + 53525 0.68 0.630125
Target:  5'- cGCgGGCGUCaaGCUCAaCGGCcaGCGCg -3'
miRNA:   3'- -CGaCUGCAGcgCGAGUgGCCGa-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.