miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18387 3' -62.6 NC_004681.1 + 68700 0.67 0.350559
Target:  5'- ----gGCCUGCUCCGCUccuacgaggacuaugGCCCGCUg- -3'
miRNA:   3'- aauugUGGGCGGGGCGA---------------CGGGCGGug -5'
18387 3' -62.6 NC_004681.1 + 64904 0.69 0.261795
Target:  5'- cUGGCAUCUcUCCCGCggcGCCCGCCu- -3'
miRNA:   3'- aAUUGUGGGcGGGGCGa--CGGGCGGug -5'
18387 3' -62.6 NC_004681.1 + 61659 0.66 0.405845
Target:  5'- --cGCGCagaagCCGCCgCCGCggaGgCCGCCGCc -3'
miRNA:   3'- aauUGUG-----GGCGG-GGCGa--CgGGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 61505 0.74 0.109159
Target:  5'- -gAGCugCCGcCCCCGUUGCUguUGCCGCc -3'
miRNA:   3'- aaUUGugGGC-GGGGCGACGG--GCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 61033 0.68 0.295198
Target:  5'- --cACGCCUccacugugGUUCCGCUGCCCGCgAa -3'
miRNA:   3'- aauUGUGGG--------CGGGGCGACGGGCGgUg -5'
18387 3' -62.6 NC_004681.1 + 59687 0.66 0.363459
Target:  5'- -cAGCGCCgccaCGCCCCcugcugggaguGCgGCCUGCCAa -3'
miRNA:   3'- aaUUGUGG----GCGGGG-----------CGaCGGGCGGUg -5'
18387 3' -62.6 NC_004681.1 + 57920 0.66 0.371687
Target:  5'- -aGGgGCCaGCCCCGCU-CCuuCGCCACc -3'
miRNA:   3'- aaUUgUGGgCGGGGCGAcGG--GCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 55891 0.67 0.334896
Target:  5'- --cGCGCCgaagaacaagaacuaCGCCgCGCaggucgugcgcgUGCCCGCCACc -3'
miRNA:   3'- aauUGUGG---------------GCGGgGCG------------ACGGGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 53808 0.66 0.380041
Target:  5'- ---uCACCCaCCUCGCcauccUGCUCGCCAUu -3'
miRNA:   3'- aauuGUGGGcGGGGCG-----ACGGGCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 53612 0.66 0.388519
Target:  5'- cUUGACGCCCGCgaugucaCCGCgGUCaugggUGCCACu -3'
miRNA:   3'- -AAUUGUGGGCGg------GGCGaCGG-----GCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 50820 0.66 0.371687
Target:  5'- gUGAC-CCCGCCcaCCGCcacccaGCUCGCCGa -3'
miRNA:   3'- aAUUGuGGGCGG--GGCGa-----CGGGCGGUg -5'
18387 3' -62.6 NC_004681.1 + 49450 0.66 0.397121
Target:  5'- --uGCGCCCaguggucaGCgCCCGCgGCgCCGCCGu -3'
miRNA:   3'- aauUGUGGG--------CG-GGGCGaCG-GGCGGUg -5'
18387 3' -62.6 NC_004681.1 + 49254 0.66 0.397121
Target:  5'- ---gUACUCGCUgucgCCGCUGCCauCGUCACg -3'
miRNA:   3'- aauuGUGGGCGG----GGCGACGG--GCGGUG- -5'
18387 3' -62.6 NC_004681.1 + 48561 0.76 0.0768
Target:  5'- -cAGCACCCaGCCCUGCUGCaucguggGCCACg -3'
miRNA:   3'- aaUUGUGGG-CGGGGCGACGgg-----CGGUG- -5'
18387 3' -62.6 NC_004681.1 + 46830 0.66 0.397121
Target:  5'- -aGACGCa-GCCCCGCgGCaaCCGCCcCg -3'
miRNA:   3'- aaUUGUGggCGGGGCGaCG--GGCGGuG- -5'
18387 3' -62.6 NC_004681.1 + 46621 0.67 0.347385
Target:  5'- -gGAC-CCCGCCCCGCacacGCCCaCUg- -3'
miRNA:   3'- aaUUGuGGGCGGGGCGa---CGGGcGGug -5'
18387 3' -62.6 NC_004681.1 + 46410 0.67 0.338763
Target:  5'- ----uGCCUGgCCCacgaugcaggaugGCUGCCCGCCGu -3'
miRNA:   3'- aauugUGGGCgGGG-------------CGACGGGCGGUg -5'
18387 3' -62.6 NC_004681.1 + 45068 0.67 0.324241
Target:  5'- -aAGCAUCCGCCgCGgucgagGCCCucGCCGCg -3'
miRNA:   3'- aaUUGUGGGCGGgGCga----CGGG--CGGUG- -5'
18387 3' -62.6 NC_004681.1 + 44117 0.66 0.371687
Target:  5'- -aGGCACCUGCCucacccccgaggCCGCgggccugGCCCucaccgGCCGCg -3'
miRNA:   3'- aaUUGUGGGCGG------------GGCGa------CGGG------CGGUG- -5'
18387 3' -62.6 NC_004681.1 + 44045 0.72 0.162195
Target:  5'- -cAACACCUcCCaCUGCgggGCCUGCCACa -3'
miRNA:   3'- aaUUGUGGGcGG-GGCGa--CGGGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.