miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18407 5' -54.4 NC_004681.1 + 58768 0.77 0.268961
Target:  5'- gCCAUCaggCAGGUGUGGCCcgCGGCgcaGGCg -3'
miRNA:   3'- -GGUAGa--GUCCGCGCUGGuaGCUG---UCG- -5'
18407 5' -54.4 NC_004681.1 + 33404 0.68 0.743895
Target:  5'- aCGUCcCGgcguacaccgcGGCGCGACCGgcgucgaugacaccCGGCAGCg -3'
miRNA:   3'- gGUAGaGU-----------CCGCGCUGGUa-------------GCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 45231 0.68 0.760027
Target:  5'- aCgGUCguugUAGGUGUaGACCugcgCGACGGCg -3'
miRNA:   3'- -GgUAGa---GUCCGCG-CUGGua--GCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 65190 0.66 0.868032
Target:  5'- uCCAUCauugcCAGGC-CGACC-UCGGCgaccacccgAGCg -3'
miRNA:   3'- -GGUAGa----GUCCGcGCUGGuAGCUG---------UCG- -5'
18407 5' -54.4 NC_004681.1 + 61783 0.73 0.467833
Target:  5'- uCCAUCUUGgagaccucGGCgGCGGCCuccgCGGCGGCg -3'
miRNA:   3'- -GGUAGAGU--------CCG-CGCUGGua--GCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 58894 0.73 0.467833
Target:  5'- cCCAgcaaCUCcuGGGCGCGcGCC-UCGACGGUg -3'
miRNA:   3'- -GGUa---GAG--UCCGCGC-UGGuAGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 12723 0.71 0.580779
Target:  5'- aCGUCUUGGGCGUGuauGCCAUCua-GGCa -3'
miRNA:   3'- gGUAGAGUCCGCGC---UGGUAGcugUCG- -5'
18407 5' -54.4 NC_004681.1 + 51184 0.71 0.606385
Target:  5'- gUCGUCUUGGGCGCucuggacuucucucaGGCCGUCGAggaGGUc -3'
miRNA:   3'- -GGUAGAGUCCGCG---------------CUGGUAGCUg--UCG- -5'
18407 5' -54.4 NC_004681.1 + 3754 0.7 0.655695
Target:  5'- aCCAUCU-GGGCgGCGA-CGUCGAaGGCg -3'
miRNA:   3'- -GGUAGAgUCCG-CGCUgGUAGCUgUCG- -5'
18407 5' -54.4 NC_004681.1 + 13031 0.68 0.739817
Target:  5'- gCCG-CUCAGG-GCcuuuCCGUUGACAGUg -3'
miRNA:   3'- -GGUaGAGUCCgCGcu--GGUAGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 62792 0.69 0.708756
Target:  5'- uCCGcCUCAuccGGCGCcgacGACgCAUCGuCAGCa -3'
miRNA:   3'- -GGUaGAGU---CCGCG----CUG-GUAGCuGUCG- -5'
18407 5' -54.4 NC_004681.1 + 50369 0.7 0.634256
Target:  5'- cCCuUCUUgcgguGGGCGCggGACCAg-GACAGCg -3'
miRNA:   3'- -GGuAGAG-----UCCGCG--CUGGUagCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 34269 0.77 0.275026
Target:  5'- -aGUCUCAGGCGgGGCCuUCGGCuuugucgGGCa -3'
miRNA:   3'- ggUAGAGUCCGCgCUGGuAGCUG-------UCG- -5'
18407 5' -54.4 NC_004681.1 + 71535 0.68 0.729552
Target:  5'- uCUAUCUCAcGCGCGAgCAUC-AUGGUg -3'
miRNA:   3'- -GGUAGAGUcCGCGCUgGUAGcUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 42351 0.76 0.342533
Target:  5'- gCCuUCcgCGGGCGgGACCAgcagcUCGGCGGCc -3'
miRNA:   3'- -GGuAGa-GUCCGCgCUGGU-----AGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 2214 0.7 0.634256
Target:  5'- aCAUCagCGGGgGUGGCCAguacccCGugGGCa -3'
miRNA:   3'- gGUAGa-GUCCgCGCUGGUa-----GCugUCG- -5'
18407 5' -54.4 NC_004681.1 + 69142 0.68 0.739817
Target:  5'- gCCAUCggugucgCAGGUGCGGCCcggUGuCAGg -3'
miRNA:   3'- -GGUAGa------GUCCGCGCUGGua-GCuGUCg -5'
18407 5' -54.4 NC_004681.1 + 41184 0.68 0.749979
Target:  5'- aCCAacgCUgAGGCGUucggugaGCaCAUCGGCGGCg -3'
miRNA:   3'- -GGUa--GAgUCCGCGc------UG-GUAGCUGUCG- -5'
18407 5' -54.4 NC_004681.1 + 20486 0.74 0.402097
Target:  5'- -gGUCUCAGGCG-GGCCGUCuucCGGCu -3'
miRNA:   3'- ggUAGAGUCCGCgCUGGUAGcu-GUCG- -5'
18407 5' -54.4 NC_004681.1 + 7968 0.72 0.538671
Target:  5'- cUCAUCgaCGGGCGCGGgCucuUCGuCAGCg -3'
miRNA:   3'- -GGUAGa-GUCCGCGCUgGu--AGCuGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.