miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18431 3' -53.9 NC_004681.1 + 33985 0.66 0.88485
Target:  5'- ----uUGuCACCGACCU--CGGGUACGc -3'
miRNA:   3'- cgauuGC-GUGGCUGGAcuGCCCAUGU- -5'
18431 3' -53.9 NC_004681.1 + 40151 0.66 0.877411
Target:  5'- uGCUGGCGU--CGGCCUG-CGGGa--- -3'
miRNA:   3'- -CGAUUGCGugGCUGGACuGCCCaugu -5'
18431 3' -53.9 NC_004681.1 + 20020 0.66 0.869727
Target:  5'- cGCUGucgaacCGCGgaGACCagGACGGGUGg- -3'
miRNA:   3'- -CGAUu-----GCGUggCUGGa-CUGCCCAUgu -5'
18431 3' -53.9 NC_004681.1 + 60738 0.66 0.869727
Target:  5'- cGC--GCGCAucagacCCGACUUGA-GGGUGCc -3'
miRNA:   3'- -CGauUGCGU------GGCUGGACUgCCCAUGu -5'
18431 3' -53.9 NC_004681.1 + 7484 0.66 0.869727
Target:  5'- uGCguucgGACGCuCCGgucgauGCCUGGgccUGGGUGCGc -3'
miRNA:   3'- -CGa----UUGCGuGGC------UGGACU---GCCCAUGU- -5'
18431 3' -53.9 NC_004681.1 + 23855 0.66 0.869727
Target:  5'- aGCUGGauCAgCGGCCUGACGG--ACAc -3'
miRNA:   3'- -CGAUUgcGUgGCUGGACUGCCcaUGU- -5'
18431 3' -53.9 NC_004681.1 + 25287 0.66 0.861806
Target:  5'- uGCcAGCGcCGCCaggGGCCUGAcCGGGgcCAc -3'
miRNA:   3'- -CGaUUGC-GUGG---CUGGACU-GCCCauGU- -5'
18431 3' -53.9 NC_004681.1 + 39563 0.66 0.848654
Target:  5'- aGCcAGCGCACCGcggaggugugucgcaGCCgguGCGGGUGgAa -3'
miRNA:   3'- -CGaUUGCGUGGC---------------UGGac-UGCCCAUgU- -5'
18431 3' -53.9 NC_004681.1 + 5299 0.66 0.845276
Target:  5'- uCUGugGCGacagcUCGGCCaUGGCGGGcGCGg -3'
miRNA:   3'- cGAUugCGU-----GGCUGG-ACUGCCCaUGU- -5'
18431 3' -53.9 NC_004681.1 + 28163 0.67 0.836684
Target:  5'- gGC-AGCgGCACCGGCaCUGACGcaGGUGa- -3'
miRNA:   3'- -CGaUUG-CGUGGCUG-GACUGC--CCAUgu -5'
18431 3' -53.9 NC_004681.1 + 30980 0.67 0.827884
Target:  5'- --gGACGCACaagGACCUGGacUGGGcGCAc -3'
miRNA:   3'- cgaUUGCGUGg--CUGGACU--GCCCaUGU- -5'
18431 3' -53.9 NC_004681.1 + 39356 0.67 0.818885
Target:  5'- cGCUGugG-AUCGGCCUGGgGGGa--- -3'
miRNA:   3'- -CGAUugCgUGGCUGGACUgCCCaugu -5'
18431 3' -53.9 NC_004681.1 + 69271 0.68 0.781094
Target:  5'- cCUGAUGgGCCGAUCUGAUGGaccGCGu -3'
miRNA:   3'- cGAUUGCgUGGCUGGACUGCCca-UGU- -5'
18431 3' -53.9 NC_004681.1 + 41968 0.68 0.771248
Target:  5'- uGCuUAACcgGCGCUGACCUGaccuacGCGGGgGCGa -3'
miRNA:   3'- -CG-AUUG--CGUGGCUGGAC------UGCCCaUGU- -5'
18431 3' -53.9 NC_004681.1 + 56014 0.68 0.761264
Target:  5'- gGCgggcACGCGCaCGACCUGcGCGGcGUAg- -3'
miRNA:   3'- -CGau--UGCGUG-GCUGGAC-UGCC-CAUgu -5'
18431 3' -53.9 NC_004681.1 + 30592 0.69 0.740922
Target:  5'- --aGGCGguUCGcuGCCUGACGGcGUGCGu -3'
miRNA:   3'- cgaUUGCguGGC--UGGACUGCC-CAUGU- -5'
18431 3' -53.9 NC_004681.1 + 13127 0.69 0.730586
Target:  5'- cGCUGccCGcCACCGcCCUucguggcacGGCGGGUACGg -3'
miRNA:   3'- -CGAUu-GC-GUGGCuGGA---------CUGCCCAUGU- -5'
18431 3' -53.9 NC_004681.1 + 19693 0.69 0.699053
Target:  5'- cGC-AGCGCGCCcagagcucguuGACC--GCGGGUGCGg -3'
miRNA:   3'- -CGaUUGCGUGG-----------CUGGacUGCCCAUGU- -5'
18431 3' -53.9 NC_004681.1 + 30073 0.69 0.699053
Target:  5'- uGUUGGggguUGgGCCGACCUGGCGGGc--- -3'
miRNA:   3'- -CGAUU----GCgUGGCUGGACUGCCCaugu -5'
18431 3' -53.9 NC_004681.1 + 5673 0.7 0.645382
Target:  5'- aCUGuuGCGCuugauGgCGACCcgUGACGGGUGCAu -3'
miRNA:   3'- cGAU--UGCG-----UgGCUGG--ACUGCCCAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.