miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18431 5' -60.8 NC_004681.1 + 29965 1.12 0.000305
Target:  5'- aCCCUUGCCCGCCAGGUCGGCCCAACCc -3'
miRNA:   3'- -GGGAACGGGCGGUCCAGCCGGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 51842 0.78 0.092769
Target:  5'- aCUCUUGCCCgcGCCGGGgCGGCCgccgaCGACCa -3'
miRNA:   3'- -GGGAACGGG--CGGUCCaGCCGG-----GUUGG- -5'
18431 5' -60.8 NC_004681.1 + 26445 0.76 0.130376
Target:  5'- cCCCUUcGCgCCGCCAGaGUacggcuaCGGCCUGGCCu -3'
miRNA:   3'- -GGGAA-CG-GGCGGUC-CA-------GCCGGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 16117 0.74 0.173532
Target:  5'- gCCCUUGCCagcaGCCGGGaCGauGCCCAgauacgcggagGCCa -3'
miRNA:   3'- -GGGAACGGg---CGGUCCaGC--CGGGU-----------UGG- -5'
18431 5' -60.8 NC_004681.1 + 65074 0.74 0.182552
Target:  5'- cCCCgcucgggUGgUCGCCgAGGUCGGCCUGGCa -3'
miRNA:   3'- -GGGa------ACgGGCGG-UCCAGCCGGGUUGg -5'
18431 5' -60.8 NC_004681.1 + 40113 0.73 0.206931
Target:  5'- cCCCgggGgUCGCCAGGUCGGUgaCCGcCCg -3'
miRNA:   3'- -GGGaa-CgGGCGGUCCAGCCG--GGUuGG- -5'
18431 5' -60.8 NC_004681.1 + 18118 0.73 0.212134
Target:  5'- cCCCcgGCCaggcaccggGUCAGGUCGGCCCGuuccCCa -3'
miRNA:   3'- -GGGaaCGGg--------CGGUCCAGCCGGGUu---GG- -5'
18431 5' -60.8 NC_004681.1 + 25292 0.72 0.228418
Target:  5'- gCCgUUGCcagcgCCGCCAGG--GGCCUGACCg -3'
miRNA:   3'- -GGgAACG-----GGCGGUCCagCCGGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 1411 0.72 0.245746
Target:  5'- gCCCUUGUCgGCgAGGUCGucGgCCAGCUc -3'
miRNA:   3'- -GGGAACGGgCGgUCCAGC--CgGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 66957 0.71 0.283659
Target:  5'- cUCCagggcUGCUCGCCAGuGUcCGGCUgAACCa -3'
miRNA:   3'- -GGGa----ACGGGCGGUC-CA-GCCGGgUUGG- -5'
18431 5' -60.8 NC_004681.1 + 31857 0.7 0.303582
Target:  5'- uUCUUGCCgGUCuggguacuugaucGGGUCGGCgCCuGCCa -3'
miRNA:   3'- gGGAACGGgCGG-------------UCCAGCCG-GGuUGG- -5'
18431 5' -60.8 NC_004681.1 + 52867 0.7 0.311416
Target:  5'- aCCgaggugcUGUCCGCCAGGUCGa-CCAugCa -3'
miRNA:   3'- gGGa------ACGGGCGGUCCAGCcgGGUugG- -5'
18431 5' -60.8 NC_004681.1 + 10196 0.7 0.326051
Target:  5'- uCCCaUUGCCCGUaggCAGGUa-GCCCucAACCu -3'
miRNA:   3'- -GGG-AACGGGCG---GUCCAgcCGGG--UUGG- -5'
18431 5' -60.8 NC_004681.1 + 26838 0.7 0.333558
Target:  5'- gCCCUUGUa-GCCgAGGUUGGCCgGGgCg -3'
miRNA:   3'- -GGGAACGggCGG-UCCAGCCGGgUUgG- -5'
18431 5' -60.8 NC_004681.1 + 26214 0.7 0.333558
Target:  5'- gUCCUgGCCCGCCAcGG-CGGCgaugCCcGCCc -3'
miRNA:   3'- -GGGAaCGGGCGGU-CCaGCCG----GGuUGG- -5'
18431 5' -60.8 NC_004681.1 + 5185 0.69 0.372969
Target:  5'- aCCCUguccgcGCCCGCCA---UGGCCgAGCUg -3'
miRNA:   3'- -GGGAa-----CGGGCGGUccaGCCGGgUUGG- -5'
18431 5' -60.8 NC_004681.1 + 39197 0.69 0.381222
Target:  5'- gUgUUGCCCGCgCAGGU-GGCC--ACCa -3'
miRNA:   3'- gGgAACGGGCG-GUCCAgCCGGguUGG- -5'
18431 5' -60.8 NC_004681.1 + 49484 0.69 0.389595
Target:  5'- gCCCUacUGCCCagucGCCgGGGUCcuGCgCAACCa -3'
miRNA:   3'- -GGGA--ACGGG----CGG-UCCAGc-CGgGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 44893 0.69 0.389595
Target:  5'- gUCUUGCCCaccuCCAGGgCGGUCCAGa- -3'
miRNA:   3'- gGGAACGGGc---GGUCCaGCCGGGUUgg -5'
18431 5' -60.8 NC_004681.1 + 14265 0.69 0.389595
Target:  5'- uUCCUUGCCCGCCuuGcCGaagauGCCCugcACCu -3'
miRNA:   3'- -GGGAACGGGCGGucCaGC-----CGGGu--UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.