Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18431 | 5' | -60.8 | NC_004681.1 | + | 482 | 0.68 | 0.43322 |
Target: 5'- gCCCUUGCC--CCAGGUCuugaccgcgGGCUCGuCCu -3' miRNA: 3'- -GGGAACGGgcGGUCCAG---------CCGGGUuGG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 1411 | 0.72 | 0.245746 |
Target: 5'- gCCCUUGUCgGCgAGGUCGucGgCCAGCUc -3' miRNA: 3'- -GGGAACGGgCGgUCCAGC--CgGGUUGG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 1646 | 0.68 | 0.424268 |
Target: 5'- cCCCgccGCCCaGCUgaAGGcUGGCCCGgucACCa -3' miRNA: 3'- -GGGaa-CGGG-CGG--UCCaGCCGGGU---UGG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 5185 | 0.69 | 0.372969 |
Target: 5'- aCCCUguccgcGCCCGCCA---UGGCCgAGCUg -3' miRNA: 3'- -GGGAa-----CGGGCGGUccaGCCGGgUUGG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 5790 | 0.68 | 0.412796 |
Target: 5'- cUCCa-GCCCGUCAGGguugaagaagcggaUCGGCaCGACCu -3' miRNA: 3'- -GGGaaCGGGCGGUCC--------------AGCCGgGUUGG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 6303 | 0.66 | 0.518303 |
Target: 5'- ----gGCCUGCCGcGGUCGGaugaCCCGaagGCCg -3' miRNA: 3'- gggaaCGGGCGGU-CCAGCC----GGGU---UGG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 6455 | 0.66 | 0.547154 |
Target: 5'- gUCUccGCCCGCCucGGUgcCGGgacuaucCCCGACCa -3' miRNA: 3'- -GGGaaCGGGCGGu-CCA--GCC-------GGGUUGG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 10196 | 0.7 | 0.326051 |
Target: 5'- uCCCaUUGCCCGUaggCAGGUa-GCCCucAACCu -3' miRNA: 3'- -GGG-AACGGGCG---GUCCAgcCGGG--UUGG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 10839 | 0.68 | 0.424268 |
Target: 5'- gCCCUUGUCC-CaguGGUCGcggacGCCCAGCa -3' miRNA: 3'- -GGGAACGGGcGgu-CCAGC-----CGGGUUGg -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 12225 | 0.67 | 0.470089 |
Target: 5'- cCCCggugGCCCGUucugggcugaguCGGGU-GGCCCGgugcugugGCCg -3' miRNA: 3'- -GGGaa--CGGGCG------------GUCCAgCCGGGU--------UGG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 13524 | 0.66 | 0.518303 |
Target: 5'- gCCCU--CCCGCCGuGGUUcGCUCcGCCa -3' miRNA: 3'- -GGGAacGGGCGGU-CCAGcCGGGuUGG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 13552 | 0.68 | 0.397234 |
Target: 5'- --aUUGCCCGCgAGGuccuucaUCGGCUC-GCCg -3' miRNA: 3'- gggAACGGGCGgUCC-------AGCCGGGuUGG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 14265 | 0.69 | 0.389595 |
Target: 5'- uUCCUUGCCCGCCuuGcCGaagauGCCCugcACCu -3' miRNA: 3'- -GGGAACGGGCGGucCaGC-----CGGGu--UGG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 14603 | 0.67 | 0.489115 |
Target: 5'- aCCUUGCUcgCGCCAGcacCGGCC--ACCa -3' miRNA: 3'- gGGAACGG--GCGGUCca-GCCGGguUGG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 14913 | 0.67 | 0.489115 |
Target: 5'- gCCCacGCCCucgguacggGCCAGcUgGGCgCCAGCCu -3' miRNA: 3'- -GGGaaCGGG---------CGGUCcAgCCG-GGUUGG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 15026 | 0.68 | 0.415427 |
Target: 5'- cCCCaaGUcguucgUCGCgCAGGUCGGCaCCAugCu -3' miRNA: 3'- -GGGaaCG------GGCG-GUCCAGCCG-GGUugG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 16117 | 0.74 | 0.173532 |
Target: 5'- gCCCUUGCCagcaGCCGGGaCGauGCCCAgauacgcggagGCCa -3' miRNA: 3'- -GGGAACGGg---CGGUCCaGC--CGGGU-----------UGG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 17528 | 0.66 | 0.548158 |
Target: 5'- gCgUUGCCCGuCCAcauGUUGGCgCCAcCCg -3' miRNA: 3'- gGgAACGGGC-GGUc--CAGCCG-GGUuGG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 17913 | 0.66 | 0.557223 |
Target: 5'- gCCUUGCgcggCCGCCGcguugauGUCGGCCUgcgugggcugcggAACCu -3' miRNA: 3'- gGGAACG----GGCGGUc------CAGCCGGG-------------UUGG- -5' |
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18431 | 5' | -60.8 | NC_004681.1 | + | 18118 | 0.73 | 0.212134 |
Target: 5'- cCCCcgGCCaggcaccggGUCAGGUCGGCCCGuuccCCa -3' miRNA: 3'- -GGGaaCGGg--------CGGUCCAGCCGGGUu---GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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