miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18431 5' -60.8 NC_004681.1 + 29965 1.12 0.000305
Target:  5'- aCCCUUGCCCGCCAGGUCGGCCCAACCc -3'
miRNA:   3'- -GGGAACGGGCGGUCCAGCCGGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 45064 0.66 0.548158
Target:  5'- gCCgaaGCauCCGCCGcGGUCgaGGCCCucGCCg -3'
miRNA:   3'- gGGaa-CG--GGCGGU-CCAG--CCGGGu-UGG- -5'
18431 5' -60.8 NC_004681.1 + 6455 0.66 0.547154
Target:  5'- gUCUccGCCCGCCucGGUgcCGGgacuaucCCCGACCa -3'
miRNA:   3'- -GGGaaCGGGCGGu-CCA--GCC-------GGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 13524 0.66 0.518303
Target:  5'- gCCCU--CCCGCCGuGGUUcGCUCcGCCa -3'
miRNA:   3'- -GGGAacGGGCGGU-CCAGcCGGGuUGG- -5'
18431 5' -60.8 NC_004681.1 + 6303 0.66 0.518303
Target:  5'- ----gGCCUGCCGcGGUCGGaugaCCCGaagGCCg -3'
miRNA:   3'- gggaaCGGGCGGU-CCAGCC----GGGU---UGG- -5'
18431 5' -60.8 NC_004681.1 + 12225 0.67 0.470089
Target:  5'- cCCCggugGCCCGUucugggcugaguCGGGU-GGCCCGgugcugugGCCg -3'
miRNA:   3'- -GGGaa--CGGGCG------------GUCCAgCCGGGU--------UGG- -5'
18431 5' -60.8 NC_004681.1 + 63432 0.68 0.43322
Target:  5'- uCCCUgGCCa-CCAGGcuuccagccUCGGCCgGAUCa -3'
miRNA:   3'- -GGGAaCGGgcGGUCC---------AGCCGGgUUGG- -5'
18431 5' -60.8 NC_004681.1 + 15026 0.68 0.415427
Target:  5'- cCCCaaGUcguucgUCGCgCAGGUCGGCaCCAugCu -3'
miRNA:   3'- -GGGaaCG------GGCG-GUCCAGCCG-GGUugG- -5'
18431 5' -60.8 NC_004681.1 + 49484 0.69 0.389595
Target:  5'- gCCCUacUGCCCagucGCCgGGGUCcuGCgCAACCa -3'
miRNA:   3'- -GGGA--ACGGG----CGG-UCCAGc-CGgGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 26445 0.76 0.130376
Target:  5'- cCCCUUcGCgCCGCCAGaGUacggcuaCGGCCUGGCCu -3'
miRNA:   3'- -GGGAA-CG-GGCGGUC-CA-------GCCGGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 65074 0.74 0.182552
Target:  5'- cCCCgcucgggUGgUCGCCgAGGUCGGCCUGGCa -3'
miRNA:   3'- -GGGa------ACgGGCGG-UCCAGCCGGGUUGg -5'
18431 5' -60.8 NC_004681.1 + 40113 0.73 0.206931
Target:  5'- cCCCgggGgUCGCCAGGUCGGUgaCCGcCCg -3'
miRNA:   3'- -GGGaa-CgGGCGGUCCAGCCG--GGUuGG- -5'
18431 5' -60.8 NC_004681.1 + 18118 0.73 0.212134
Target:  5'- cCCCcgGCCaggcaccggGUCAGGUCGGCCCGuuccCCa -3'
miRNA:   3'- -GGGaaCGGg--------CGGUCCAGCCGGGUu---GG- -5'
18431 5' -60.8 NC_004681.1 + 26214 0.7 0.333558
Target:  5'- gUCCUgGCCCGCCAcGG-CGGCgaugCCcGCCc -3'
miRNA:   3'- -GGGAaCGGGCGGU-CCaGCCG----GGuUGG- -5'
18431 5' -60.8 NC_004681.1 + 5185 0.69 0.372969
Target:  5'- aCCCUguccgcGCCCGCCA---UGGCCgAGCUg -3'
miRNA:   3'- -GGGAa-----CGGGCGGUccaGCCGGgUUGG- -5'
18431 5' -60.8 NC_004681.1 + 17913 0.66 0.557223
Target:  5'- gCCUUGCgcggCCGCCGcguugauGUCGGCCUgcgugggcugcggAACCu -3'
miRNA:   3'- gGGAACG----GGCGGUc------CAGCCGGG-------------UUGG- -5'
18431 5' -60.8 NC_004681.1 + 16117 0.74 0.173532
Target:  5'- gCCCUUGCCagcaGCCGGGaCGauGCCCAgauacgcggagGCCa -3'
miRNA:   3'- -GGGAACGGg---CGGUCCaGC--CGGGU-----------UGG- -5'
18431 5' -60.8 NC_004681.1 + 25292 0.72 0.228418
Target:  5'- gCCgUUGCcagcgCCGCCAGG--GGCCUGACCg -3'
miRNA:   3'- -GGgAACG-----GGCGGUCCagCCGGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 1411 0.72 0.245746
Target:  5'- gCCCUUGUCgGCgAGGUCGucGgCCAGCUc -3'
miRNA:   3'- -GGGAACGGgCGgUCCAGC--CgGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 66957 0.71 0.283659
Target:  5'- cUCCagggcUGCUCGCCAGuGUcCGGCUgAACCa -3'
miRNA:   3'- -GGGa----ACGGGCGGUC-CA-GCCGGgUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.