miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18452 5' -53.5 NC_004681.1 + 39300 1.1 0.002021
Target:  5'- cACCAUCGACAAAUACCUGCGCGCGCGg -3'
miRNA:   3'- -UGGUAGCUGUUUAUGGACGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 33491 0.75 0.395822
Target:  5'- cGCCGaugCGGuuCAGGUGCCacacgGCGCGCGCGa -3'
miRNA:   3'- -UGGUa--GCU--GUUUAUGGa----CGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 61267 0.74 0.462153
Target:  5'- cGCCGUCGACccaguUGcCCUGgGCGuCGCGg -3'
miRNA:   3'- -UGGUAGCUGuuu--AU-GGACgCGC-GCGC- -5'
18452 5' -53.5 NC_004681.1 + 14583 0.73 0.469107
Target:  5'- gGCCAccagcgcgcccugcUCGGCGGAgGCg-GCGCGCGCGg -3'
miRNA:   3'- -UGGU--------------AGCUGUUUaUGgaCGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 15756 0.73 0.482161
Target:  5'- cGCCGUUGGCGucugcgugaGCCU-CGCGCGCGg -3'
miRNA:   3'- -UGGUAGCUGUuua------UGGAcGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 50062 0.72 0.523365
Target:  5'- cGCCAUCGAC---UGCCUGCGgGuCGaCGu -3'
miRNA:   3'- -UGGUAGCUGuuuAUGGACGCgC-GC-GC- -5'
18452 5' -53.5 NC_004681.1 + 72343 0.72 0.544473
Target:  5'- cGCCAUCGugGAGUccaucaACC-GC-CGCGCGg -3'
miRNA:   3'- -UGGUAGCugUUUA------UGGaCGcGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 60161 0.72 0.544473
Target:  5'- gGCCAUUGACAAGgcUGCUgGUGCugaGCGCGa -3'
miRNA:   3'- -UGGUAGCUGUUU--AUGGaCGCG---CGCGC- -5'
18452 5' -53.5 NC_004681.1 + 64833 0.72 0.555131
Target:  5'- cCCGUgGGacuGGUACCUGCGC-CGCGa -3'
miRNA:   3'- uGGUAgCUgu-UUAUGGACGCGcGCGC- -5'
18452 5' -53.5 NC_004681.1 + 62345 0.71 0.575542
Target:  5'- cGCgGUgGACGAAgACCuuggcgaUGCGCGCGCa -3'
miRNA:   3'- -UGgUAgCUGUUUaUGG-------ACGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 39370 0.71 0.609172
Target:  5'- cGCaCAUCGGgGAGUACUUGaCGCG-GCGg -3'
miRNA:   3'- -UG-GUAGCUgUUUAUGGAC-GCGCgCGC- -5'
18452 5' -53.5 NC_004681.1 + 11973 0.71 0.620073
Target:  5'- uCCucggUGACGucGGUACgCUGCGCGCGCc -3'
miRNA:   3'- uGGua--GCUGU--UUAUG-GACGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 5442 0.71 0.630984
Target:  5'- cACCGggaGGCGugccagcGCCUGUGCGCGCu -3'
miRNA:   3'- -UGGUag-CUGUuua----UGGACGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 42013 0.71 0.630984
Target:  5'- aGCCuuGUCGACGccaACCUcGUGCGCGCc -3'
miRNA:   3'- -UGG--UAGCUGUuuaUGGA-CGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 52866 0.7 0.641897
Target:  5'- gGCCAUCGGCc--UGCCcGCGUGCcCGa -3'
miRNA:   3'- -UGGUAGCUGuuuAUGGaCGCGCGcGC- -5'
18452 5' -53.5 NC_004681.1 + 45702 0.7 0.6528
Target:  5'- cGCC-UCGcCGAGUACCaGCGC-CGCGu -3'
miRNA:   3'- -UGGuAGCuGUUUAUGGaCGCGcGCGC- -5'
18452 5' -53.5 NC_004681.1 + 58652 0.7 0.6528
Target:  5'- cGCCA-CGGCc---GCCUGCGC-CGCGg -3'
miRNA:   3'- -UGGUaGCUGuuuaUGGACGCGcGCGC- -5'
18452 5' -53.5 NC_004681.1 + 58769 0.7 0.663685
Target:  5'- cGCCAUCaGGCAGGUgugGCCcGCG-GCGCa -3'
miRNA:   3'- -UGGUAG-CUGUUUA---UGGaCGCgCGCGc -5'
18452 5' -53.5 NC_004681.1 + 27175 0.7 0.663685
Target:  5'- -aCAUCGACAcg-AUCacagGCGCGCGCu -3'
miRNA:   3'- ugGUAGCUGUuuaUGGa---CGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 69230 0.7 0.685357
Target:  5'- aGCCGguaGGCGAGggagGCCaggGCGCGgGCGa -3'
miRNA:   3'- -UGGUag-CUGUUUa---UGGa--CGCGCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.