miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18452 5' -53.5 NC_004681.1 + 2469 0.68 0.769163
Target:  5'- gACCAgaaucuccUCGAaGAAUGCCUGgGCcuuguuggcGCGCGg -3'
miRNA:   3'- -UGGU--------AGCUgUUUAUGGACgCG---------CGCGC- -5'
18452 5' -53.5 NC_004681.1 + 5442 0.71 0.630984
Target:  5'- cACCGggaGGCGugccagcGCCUGUGCGCGCu -3'
miRNA:   3'- -UGGUag-CUGUuua----UGGACGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 5748 0.66 0.852614
Target:  5'- gUCGUCGGCGAAgcucACCaGCuGCGUGCc -3'
miRNA:   3'- uGGUAGCUGUUUa---UGGaCG-CGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 5989 0.69 0.73847
Target:  5'- uGCCGguauUCGAgGA--GCCaGCGUGCGCGc -3'
miRNA:   3'- -UGGU----AGCUgUUuaUGGaCGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 7309 0.66 0.855944
Target:  5'- cGCCGUuacCGGCAccggccgccuucucgAGUACCUucuCGUGCGCGa -3'
miRNA:   3'- -UGGUA---GCUGU---------------UUAUGGAc--GCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 7498 0.68 0.78895
Target:  5'- cCgGUCGAUgccuggGCCUGgGUGCGCGc -3'
miRNA:   3'- uGgUAGCUGuuua--UGGACgCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 8240 0.66 0.884205
Target:  5'- gGCCGagGuCGAGgcgcACgaGCGCGCGCa -3'
miRNA:   3'- -UGGUagCuGUUUa---UGgaCGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 8370 0.69 0.717463
Target:  5'- cGCCAcCGaggcucuucaGCAucu-CCUGCGCGCGCu -3'
miRNA:   3'- -UGGUaGC----------UGUuuauGGACGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 8810 0.68 0.779131
Target:  5'- gACCAUcacCGAUGAAggUCUGCGCGaCGCa -3'
miRNA:   3'- -UGGUA---GCUGUUUauGGACGCGC-GCGc -5'
18452 5' -53.5 NC_004681.1 + 10296 0.67 0.8174
Target:  5'- -aCGUCGcCAuucGCCU-CGCGCGCGa -3'
miRNA:   3'- ugGUAGCuGUuuaUGGAcGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 11848 0.67 0.8174
Target:  5'- cACCAagauUUGGCAGucGCg-GCGCGCGCa -3'
miRNA:   3'- -UGGU----AGCUGUUuaUGgaCGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 11973 0.71 0.620073
Target:  5'- uCCucggUGACGucGGUACgCUGCGCGCGCc -3'
miRNA:   3'- uGGua--GCUGU--UUAUG-GACGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 13552 0.66 0.868893
Target:  5'- cGCCAUCaugGGCGAAgagACgUaCGCGCGCu -3'
miRNA:   3'- -UGGUAG---CUGUUUa--UGgAcGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 14445 0.67 0.835427
Target:  5'- cGCCcgCGaggcggagGCGAAcGCC-GCGCGCGCc -3'
miRNA:   3'- -UGGuaGC--------UGUUUaUGGaCGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 14583 0.73 0.469107
Target:  5'- gGCCAccagcgcgcccugcUCGGCGGAgGCg-GCGCGCGCGg -3'
miRNA:   3'- -UGGU--------------AGCUGUUUaUGgaCGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 14987 0.66 0.876673
Target:  5'- -aCGUCGGCG---ACCUGCGagGCGgGg -3'
miRNA:   3'- ugGUAGCUGUuuaUGGACGCg-CGCgC- -5'
18452 5' -53.5 NC_004681.1 + 15756 0.73 0.482161
Target:  5'- cGCCGUUGGCGucugcgugaGCCU-CGCGCGCGg -3'
miRNA:   3'- -UGGUAGCUGUuua------UGGAcGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 16767 0.67 0.835427
Target:  5'- uGCCuGUCGACAcgucGGUGCCUG-GCG-GCa -3'
miRNA:   3'- -UGG-UAGCUGU----UUAUGGACgCGCgCGc -5'
18452 5' -53.5 NC_004681.1 + 17901 0.67 0.835427
Target:  5'- cGCCgcGUUGAUGucgGCCUGCGUGgGCu -3'
miRNA:   3'- -UGG--UAGCUGUuuaUGGACGCGCgCGc -5'
18452 5' -53.5 NC_004681.1 + 18371 0.69 0.696124
Target:  5'- cGCCAUCGACAuggcagGCCagGCgGCGgcCGCGg -3'
miRNA:   3'- -UGGUAGCUGUuua---UGGa-CG-CGC--GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.