miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18452 5' -53.5 NC_004681.1 + 11848 0.67 0.8174
Target:  5'- cACCAagauUUGGCAGucGCg-GCGCGCGCa -3'
miRNA:   3'- -UGGU----AGCUGUUuaUGgaCGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 70458 0.68 0.748822
Target:  5'- cGCCAUgGugGu---CCUGCGgcCGCGCGu -3'
miRNA:   3'- -UGGUAgCugUuuauGGACGC--GCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 39942 0.68 0.769163
Target:  5'- cGCCucaaCGACAAGUcgAUCcGCGCGCGuCGg -3'
miRNA:   3'- -UGGua--GCUGUUUA--UGGaCGCGCGC-GC- -5'
18452 5' -53.5 NC_004681.1 + 8810 0.68 0.779131
Target:  5'- gACCAUcacCGAUGAAggUCUGCGCGaCGCa -3'
miRNA:   3'- -UGGUA---GCUGUUUauGGACGCGC-GCGc -5'
18452 5' -53.5 NC_004681.1 + 42396 0.68 0.787975
Target:  5'- aGCCAUcuaCGACGAAUACg-GCGCccccgucucgucgGCGCGc -3'
miRNA:   3'- -UGGUA---GCUGUUUAUGgaCGCG-------------CGCGC- -5'
18452 5' -53.5 NC_004681.1 + 7498 0.68 0.78895
Target:  5'- cCgGUCGAUgccuggGCCUGgGUGCGCGc -3'
miRNA:   3'- uGgUAGCUGuuua--UGGACgCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 24835 0.68 0.78895
Target:  5'- cUCAUCGGCGucgGCg-GCGCGgGCGg -3'
miRNA:   3'- uGGUAGCUGUuuaUGgaCGCGCgCGC- -5'
18452 5' -53.5 NC_004681.1 + 62212 0.67 0.808095
Target:  5'- cAUgGUgGGCuGGUaccgccACCUGUGCGCGCGc -3'
miRNA:   3'- -UGgUAgCUGuUUA------UGGACGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 10296 0.67 0.8174
Target:  5'- -aCGUCGcCAuucGCCU-CGCGCGCGa -3'
miRNA:   3'- ugGUAGCuGUuuaUGGAcGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 46752 0.69 0.706829
Target:  5'- -aCGUgGugGGAccgGCgCUGCGCGCGCa -3'
miRNA:   3'- ugGUAgCugUUUa--UG-GACGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 51735 0.69 0.706829
Target:  5'- gUCGUCGGCGGccGCCccgGCGCGgGCa -3'
miRNA:   3'- uGGUAGCUGUUuaUGGa--CGCGCgCGc -5'
18452 5' -53.5 NC_004681.1 + 18371 0.69 0.696124
Target:  5'- cGCCAUCGACAuggcagGCCagGCgGCGgcCGCGg -3'
miRNA:   3'- -UGGUAGCUGUuua---UGGa-CG-CGC--GCGC- -5'
18452 5' -53.5 NC_004681.1 + 50062 0.72 0.523365
Target:  5'- cGCCAUCGAC---UGCCUGCGgGuCGaCGu -3'
miRNA:   3'- -UGGUAGCUGuuuAUGGACGCgC-GC-GC- -5'
18452 5' -53.5 NC_004681.1 + 60161 0.72 0.544473
Target:  5'- gGCCAUUGACAAGgcUGCUgGUGCugaGCGCGa -3'
miRNA:   3'- -UGGUAGCUGUUU--AUGGaCGCG---CGCGC- -5'
18452 5' -53.5 NC_004681.1 + 64833 0.72 0.555131
Target:  5'- cCCGUgGGacuGGUACCUGCGC-CGCGa -3'
miRNA:   3'- uGGUAgCUgu-UUAUGGACGCGcGCGC- -5'
18452 5' -53.5 NC_004681.1 + 42013 0.71 0.630984
Target:  5'- aGCCuuGUCGACGccaACCUcGUGCGCGCc -3'
miRNA:   3'- -UGG--UAGCUGUuuaUGGA-CGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 52866 0.7 0.641897
Target:  5'- gGCCAUCGGCc--UGCCcGCGUGCcCGa -3'
miRNA:   3'- -UGGUAGCUGuuuAUGGaCGCGCGcGC- -5'
18452 5' -53.5 NC_004681.1 + 58652 0.7 0.6528
Target:  5'- cGCCA-CGGCc---GCCUGCGC-CGCGg -3'
miRNA:   3'- -UGGUaGCUGuuuaUGGACGCGcGCGC- -5'
18452 5' -53.5 NC_004681.1 + 45702 0.7 0.6528
Target:  5'- cGCC-UCGcCGAGUACCaGCGC-CGCGu -3'
miRNA:   3'- -UGGuAGCuGUUUAUGGaCGCGcGCGC- -5'
18452 5' -53.5 NC_004681.1 + 27175 0.7 0.663685
Target:  5'- -aCAUCGACAcg-AUCacagGCGCGCGCu -3'
miRNA:   3'- ugGUAGCUGUuuaUGGa---CGCGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.