miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18474 5' -65.4 NC_004681.1 + 46840 1.05 0.000315
Target:  5'- cCGCGGCAACCGCCCCGGCACCCCGAUg -3'
miRNA:   3'- -GCGCCGUUGGCGGGGCCGUGGGGCUA- -5'
18474 5' -65.4 NC_004681.1 + 56074 0.79 0.038932
Target:  5'- gGCcuGGCAGCCGagcaCCGGCACCCCGAc -3'
miRNA:   3'- gCG--CCGUUGGCgg--GGCCGUGGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 51736 0.77 0.04945
Target:  5'- uCGuCGGCGGCCGCCCCGGCgcgggcaagaguaACgCCGGUc -3'
miRNA:   3'- -GC-GCCGUUGGCGGGGCCG-------------UGgGGCUA- -5'
18474 5' -65.4 NC_004681.1 + 17819 0.75 0.067202
Target:  5'- aCGCGGCGGCCGCgcaaggcaCCGGCcucaccaacccgggcGCCCCGGc -3'
miRNA:   3'- -GCGCCGUUGGCGg-------GGCCG---------------UGGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 25074 0.75 0.070114
Target:  5'- gGCGGCAccucgcucaGCCuCCUCGGCACCUCGGUu -3'
miRNA:   3'- gCGCCGU---------UGGcGGGGCCGUGGGGCUA- -5'
18474 5' -65.4 NC_004681.1 + 31904 0.75 0.070114
Target:  5'- uCGCGGCGGCCGCCaucgCGGgccuCAUCCCGAc -3'
miRNA:   3'- -GCGCCGUUGGCGGg---GCC----GUGGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 46449 0.75 0.075906
Target:  5'- cCGCGGC--CUGCUCCGGUACCUCGGc -3'
miRNA:   3'- -GCGCCGuuGGCGGGGCCGUGGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 18480 0.74 0.083024
Target:  5'- cCGCGGCcGCCGCCUggccugccaugucgaUGGCGCCaCCGGg -3'
miRNA:   3'- -GCGCCGuUGGCGGG---------------GCCGUGG-GGCUa -5'
18474 5' -65.4 NC_004681.1 + 36960 0.73 0.098696
Target:  5'- aCGCGGCGGCCGUCaCCGGaaCGCCCUu-- -3'
miRNA:   3'- -GCGCCGUUGGCGG-GGCC--GUGGGGcua -5'
18474 5' -65.4 NC_004681.1 + 24856 0.73 0.103973
Target:  5'- gGCGGCGGCCGCCaaGGCuCCCUc-- -3'
miRNA:   3'- gCGCCGUUGGCGGggCCGuGGGGcua -5'
18474 5' -65.4 NC_004681.1 + 893 0.72 0.115332
Target:  5'- aGCGGgaAGCCGCCCUGGCGuccgccuccauCCUCGAg -3'
miRNA:   3'- gCGCCg-UUGGCGGGGCCGU-----------GGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 24943 0.72 0.118347
Target:  5'- gGCGGCcGCCGCCC--GCGCCgCCGAc -3'
miRNA:   3'- gCGCCGuUGGCGGGgcCGUGG-GGCUa -5'
18474 5' -65.4 NC_004681.1 + 60042 0.72 0.1246
Target:  5'- gGCGGCucCCGCaCCUGGCACCggCUGAc -3'
miRNA:   3'- gCGCCGuuGGCG-GGGCCGUGG--GGCUa -5'
18474 5' -65.4 NC_004681.1 + 23875 0.71 0.134556
Target:  5'- uGCGGUGGCUuCCUCGGuCACCUCGAUg -3'
miRNA:   3'- gCGCCGUUGGcGGGGCC-GUGGGGCUA- -5'
18474 5' -65.4 NC_004681.1 + 26726 0.71 0.138034
Target:  5'- -uCGGUAAgcCCGCCCCGGCcaACCUCGGc -3'
miRNA:   3'- gcGCCGUU--GGCGGGGCCG--UGGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 74522 0.71 0.141594
Target:  5'- aCGUGGCugGACCGCCCCGGaaggugACuUCCGAg -3'
miRNA:   3'- -GCGCCG--UUGGCGGGGCCg-----UG-GGGCUa -5'
18474 5' -65.4 NC_004681.1 + 40216 0.71 0.148968
Target:  5'- gGCGGUcACCGaCCUGGCGacCCCCGGg -3'
miRNA:   3'- gCGCCGuUGGCgGGGCCGU--GGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 18400 0.71 0.148968
Target:  5'- cCGCGGCGGCaaaCGCCUUcGCACCCgGAUc -3'
miRNA:   3'- -GCGCCGUUG---GCGGGGcCGUGGGgCUA- -5'
18474 5' -65.4 NC_004681.1 + 68516 0.71 0.152785
Target:  5'- uCGCGGCA--CGCCUgGGCGCCaugCCGGUg -3'
miRNA:   3'- -GCGCCGUugGCGGGgCCGUGG---GGCUA- -5'
18474 5' -65.4 NC_004681.1 + 2832 0.7 0.15669
Target:  5'- cCGCGGgGACCGCCgcuacaCGGUcaccguCCCCGAg -3'
miRNA:   3'- -GCGCCgUUGGCGGg-----GCCGu-----GGGGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.