Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18474 | 5' | -65.4 | NC_004681.1 | + | 32957 | 0.69 | 0.211013 |
Target: 5'- gGCGGCGGgUGCUUCGGCAaCCCGu- -3' miRNA: 3'- gCGCCGUUgGCGGGGCCGUgGGGCua -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 68516 | 0.71 | 0.152785 |
Target: 5'- uCGCGGCA--CGCCUgGGCGCCaugCCGGUg -3' miRNA: 3'- -GCGCCGUugGCGGGgCCGUGG---GGCUA- -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 2832 | 0.7 | 0.15669 |
Target: 5'- cCGCGGgGACCGCCgcuacaCGGUcaccguCCCCGAg -3' miRNA: 3'- -GCGCCgUUGGCGGg-----GCCGu-----GGGGCUa -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 16790 | 0.7 | 0.160686 |
Target: 5'- gGCGGCAu---CCCCGGCAUgCCCGAg -3' miRNA: 3'- gCGCCGUuggcGGGGCCGUG-GGGCUa -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 27633 | 0.7 | 0.164772 |
Target: 5'- gGCGGCGGCgGCUCUGGUcgccgauccaACUCCGGUu -3' miRNA: 3'- gCGCCGUUGgCGGGGCCG----------UGGGGCUA- -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 16555 | 0.7 | 0.174964 |
Target: 5'- cCGUGGUAugcagcuuGCCGacgagcgcuacaagcCCCCGGCGuCCCCGGUc -3' miRNA: 3'- -GCGCCGU--------UGGC---------------GGGGCCGU-GGGGCUA- -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 9290 | 0.69 | 0.200948 |
Target: 5'- gGCGGCAACuucuucggcaaCGCCUaCGGCAaCCCGGUc -3' miRNA: 3'- gCGCCGUUG-----------GCGGG-GCCGUgGGGCUA- -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 14777 | 0.69 | 0.200948 |
Target: 5'- cCGCGGa---CGCCCUGGCcAUCCUGAa -3' miRNA: 3'- -GCGCCguugGCGGGGCCG-UGGGGCUa -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 58430 | 0.69 | 0.205928 |
Target: 5'- cCGCGGCcgaCGCCaagaCCGGCGCCCaCGu- -3' miRNA: 3'- -GCGCCGuugGCGG----GGCCGUGGG-GCua -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 18400 | 0.71 | 0.148968 |
Target: 5'- cCGCGGCGGCaaaCGCCUUcGCACCCgGAUc -3' miRNA: 3'- -GCGCCGUUG---GCGGGGcCGUGGGgCUA- -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 26726 | 0.71 | 0.138034 |
Target: 5'- -uCGGUAAgcCCGCCCCGGCcaACCUCGGc -3' miRNA: 3'- gcGCCGUU--GGCGGGGCCG--UGGGGCUa -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 60042 | 0.72 | 0.1246 |
Target: 5'- gGCGGCucCCGCaCCUGGCACCggCUGAc -3' miRNA: 3'- gCGCCGuuGGCG-GGGCCGUGG--GGCUa -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 51736 | 0.77 | 0.04945 |
Target: 5'- uCGuCGGCGGCCGCCCCGGCgcgggcaagaguaACgCCGGUc -3' miRNA: 3'- -GC-GCCGUUGGCGGGGCCG-------------UGgGGCUA- -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 17819 | 0.75 | 0.067202 |
Target: 5'- aCGCGGCGGCCGCgcaaggcaCCGGCcucaccaacccgggcGCCCCGGc -3' miRNA: 3'- -GCGCCGUUGGCGg-------GGCCG---------------UGGGGCUa -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 25074 | 0.75 | 0.070114 |
Target: 5'- gGCGGCAccucgcucaGCCuCCUCGGCACCUCGGUu -3' miRNA: 3'- gCGCCGU---------UGGcGGGGCCGUGGGGCUA- -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 31904 | 0.75 | 0.070114 |
Target: 5'- uCGCGGCGGCCGCCaucgCGGgccuCAUCCCGAc -3' miRNA: 3'- -GCGCCGUUGGCGGg---GCC----GUGGGGCUa -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 46449 | 0.75 | 0.075906 |
Target: 5'- cCGCGGC--CUGCUCCGGUACCUCGGc -3' miRNA: 3'- -GCGCCGuuGGCGGGGCCGUGGGGCUa -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 36960 | 0.73 | 0.098696 |
Target: 5'- aCGCGGCGGCCGUCaCCGGaaCGCCCUu-- -3' miRNA: 3'- -GCGCCGUUGGCGG-GGCC--GUGGGGcua -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 24856 | 0.73 | 0.103973 |
Target: 5'- gGCGGCGGCCGCCaaGGCuCCCUc-- -3' miRNA: 3'- gCGCCGUUGGCGGggCCGuGGGGcua -5' |
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18474 | 5' | -65.4 | NC_004681.1 | + | 893 | 0.72 | 0.115332 |
Target: 5'- aGCGGgaAGCCGCCCUGGCGuccgccuccauCCUCGAg -3' miRNA: 3'- gCGCCg-UUGGCGGGGCCGU-----------GGGGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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