miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18474 5' -65.4 NC_004681.1 + 893 0.72 0.115332
Target:  5'- aGCGGgaAGCCGCCCUGGCGuccgccuccauCCUCGAg -3'
miRNA:   3'- gCGCCg-UUGGCGGGGCCGU-----------GGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 2430 0.67 0.280142
Target:  5'- gCGCGGCAcgcagaagugggcGCCGaCCUCGGUGCaUUCGAUg -3'
miRNA:   3'- -GCGCCGU-------------UGGC-GGGGCCGUG-GGGCUA- -5'
18474 5' -65.4 NC_004681.1 + 2736 0.66 0.294065
Target:  5'- gGCuaGGguGCCGUCCgCGGCGugaacguaauCCCCGAc -3'
miRNA:   3'- gCG--CCguUGGCGGG-GCCGU----------GGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 2832 0.7 0.15669
Target:  5'- cCGCGGgGACCGCCgcuacaCGGUcaccguCCCCGAg -3'
miRNA:   3'- -GCGCCgUUGGCGGg-----GCCGu-----GGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 3027 0.68 0.238085
Target:  5'- aGCGGCAAugcCCGCaCCCgcGGCGCCaaGGg -3'
miRNA:   3'- gCGCCGUU---GGCG-GGG--CCGUGGggCUa -5'
18474 5' -65.4 NC_004681.1 + 5783 0.67 0.272424
Target:  5'- cCGCGGCgAuguggaagaacgcugGCCGCCCCaaccugguacugcGGCacgagaagcgccucaGCCCCGAg -3'
miRNA:   3'- -GCGCCG-U---------------UGGCGGGG-------------CCG---------------UGGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 7165 0.67 0.287369
Target:  5'- gGgGGguGCCGUCCUucauGGCGCCgCGGUc -3'
miRNA:   3'- gCgCCguUGGCGGGG----CCGUGGgGCUA- -5'
18474 5' -65.4 NC_004681.1 + 7318 0.66 0.322062
Target:  5'- gCGCGGUGucGCCGUUaCCGGCACCggCCGc- -3'
miRNA:   3'- -GCGCCGU--UGGCGG-GGCCGUGG--GGCua -5'
18474 5' -65.4 NC_004681.1 + 8289 0.66 0.332321
Target:  5'- gGUGGCGcggacGCCGCCaaggaCGGCcuggacaacgacauCCCCGAg -3'
miRNA:   3'- gCGCCGU-----UGGCGGg----GCCGu-------------GGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 8512 0.66 0.30782
Target:  5'- uCGCGGacggugaGACCGCCCCcgcGGCcaucggccagaACCCCu-- -3'
miRNA:   3'- -GCGCCg------UUGGCGGGG---CCG-----------UGGGGcua -5'
18474 5' -65.4 NC_004681.1 + 8557 0.7 0.164772
Target:  5'- cCGgGGuCAGCCGCCuuGGCGCUCaCGu- -3'
miRNA:   3'- -GCgCC-GUUGGCGGggCCGUGGG-GCua -5'
18474 5' -65.4 NC_004681.1 + 8562 0.66 0.31488
Target:  5'- uCGaCGGguACCuucgcCCCCGGCAUCCUGc- -3'
miRNA:   3'- -GC-GCCguUGGc----GGGGCCGUGGGGCua -5'
18474 5' -65.4 NC_004681.1 + 9290 0.69 0.200948
Target:  5'- gGCGGCAACuucuucggcaaCGCCUaCGGCAaCCCGGUc -3'
miRNA:   3'- gCGCCGUUG-----------GCGGG-GCCGUgGGGCUA- -5'
18474 5' -65.4 NC_004681.1 + 9332 0.67 0.286706
Target:  5'- gGCGGCAagaacaucuggGgCGUCCCGGUugucaccACCCCGc- -3'
miRNA:   3'- gCGCCGU-----------UgGCGGGGCCG-------UGGGGCua -5'
18474 5' -65.4 NC_004681.1 + 10212 0.68 0.243836
Target:  5'- -cCGGCcacACCugGCCCUGGCuCCCCGGUu -3'
miRNA:   3'- gcGCCGu--UGG--CGGGGCCGuGGGGCUA- -5'
18474 5' -65.4 NC_004681.1 + 12833 0.69 0.207949
Target:  5'- gGCGGUAugggugugguccucaGCCGUCUCaguGGCACCCuCGAUg -3'
miRNA:   3'- gCGCCGU---------------UGGCGGGG---CCGUGGG-GCUA- -5'
18474 5' -65.4 NC_004681.1 + 14777 0.69 0.200948
Target:  5'- cCGCGGa---CGCCCUGGCcAUCCUGAa -3'
miRNA:   3'- -GCGCCguugGCGGGGCCG-UGGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 16195 0.66 0.322062
Target:  5'- gGCGGCuguGCgCGCCgCGGUggugacGCCaCCGAg -3'
miRNA:   3'- gCGCCGu--UG-GCGGgGCCG------UGG-GGCUa -5'
18474 5' -65.4 NC_004681.1 + 16555 0.7 0.174964
Target:  5'- cCGUGGUAugcagcuuGCCGacgagcgcuacaagcCCCCGGCGuCCCCGGUc -3'
miRNA:   3'- -GCGCCGU--------UGGC---------------GGGGCCGU-GGGGCUA- -5'
18474 5' -65.4 NC_004681.1 + 16790 0.7 0.160686
Target:  5'- gGCGGCAu---CCCCGGCAUgCCCGAg -3'
miRNA:   3'- gCGCCGUuggcGGGGCCGUG-GGGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.