miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18524 3' -53 NC_004681.1 + 67675 1.12 0.00161
Target:  5'- uCAGCCCUACUGAAGAACGACGUCGGCa -3'
miRNA:   3'- -GUCGGGAUGACUUCUUGCUGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 66940 0.66 0.894592
Target:  5'- gCGGCCCUggugccgcgcgccgaGCUcGAAG-GCGAcaucggggacagucaCGUCGGCc -3'
miRNA:   3'- -GUCGGGA---------------UGA-CUUCuUGCU---------------GCAGCCG- -5'
18524 3' -53 NC_004681.1 + 64922 0.67 0.841177
Target:  5'- -cGCCCgcCUGGAGcACGAgGU-GGCg -3'
miRNA:   3'- guCGGGauGACUUCuUGCUgCAgCCG- -5'
18524 3' -53 NC_004681.1 + 64526 0.66 0.902822
Target:  5'- cCAGCCCUcGgaGAGGAGCu-CGUCauccuuGGCg -3'
miRNA:   3'- -GUCGGGA-UgaCUUCUUGcuGCAG------CCG- -5'
18524 3' -53 NC_004681.1 + 62673 0.73 0.563011
Target:  5'- -uGCaCCUACUGcuGAcgauGCGuCGUCGGCg -3'
miRNA:   3'- guCG-GGAUGACuuCU----UGCuGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 58261 0.68 0.832426
Target:  5'- uGGCCUcACcGAAGAcgaGCGACGUCaGUu -3'
miRNA:   3'- gUCGGGaUGaCUUCU---UGCUGCAGcCG- -5'
18524 3' -53 NC_004681.1 + 53829 0.66 0.888897
Target:  5'- gCGGCaCUccGgUGAGGAuggcgACGAgGUCGGCg -3'
miRNA:   3'- -GUCGgGA--UgACUUCU-----UGCUgCAGCCG- -5'
18524 3' -53 NC_004681.1 + 53617 0.66 0.881549
Target:  5'- aGGCCCagACgGAggccaAGAACGACGgcgcccuggUCGGUg -3'
miRNA:   3'- gUCGGGa-UGaCU-----UCUUGCUGC---------AGCCG- -5'
18524 3' -53 NC_004681.1 + 51758 0.67 0.858025
Target:  5'- gGGCCauggGgUGggG-AUGACGUCGGa -3'
miRNA:   3'- gUCGGga--UgACuuCuUGCUGCAGCCg -5'
18524 3' -53 NC_004681.1 + 51425 0.67 0.849712
Target:  5'- gAGCUCcGCggcGAcGGuGAUGACGUCGGCg -3'
miRNA:   3'- gUCGGGaUGa--CU-UC-UUGCUGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 51110 0.7 0.735235
Target:  5'- -cGCCCUugUgGAAGAGCuccccGACGUCGacGCc -3'
miRNA:   3'- guCGGGAugA-CUUCUUG-----CUGCAGC--CG- -5'
18524 3' -53 NC_004681.1 + 50131 0.7 0.68216
Target:  5'- -cGCCCUcGCUGAcGAcgGCGGCaucuccguccaaGUCGGCa -3'
miRNA:   3'- guCGGGA-UGACUuCU--UGCUG------------CAGCCG- -5'
18524 3' -53 NC_004681.1 + 49652 0.75 0.450041
Target:  5'- uCGGgCCUGCccgcgGggGAaggccaggGCGAUGUCGGCa -3'
miRNA:   3'- -GUCgGGAUGa----CuuCU--------UGCUGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 48348 0.66 0.903491
Target:  5'- uCAGCCCgcgugcccguaucggACUGgcGAGCcucGGCGagGGCc -3'
miRNA:   3'- -GUCGGGa--------------UGACuuCUUG---CUGCagCCG- -5'
18524 3' -53 NC_004681.1 + 46638 0.66 0.909391
Target:  5'- -cGCCC-ACUGucuuuGAgGCGugGUCGcGCg -3'
miRNA:   3'- guCGGGaUGACuu---CU-UGCugCAGC-CG- -5'
18524 3' -53 NC_004681.1 + 45515 0.72 0.573738
Target:  5'- --cCCCUACUacAAGGGCGACGaCGGCg -3'
miRNA:   3'- gucGGGAUGAc-UUCUUGCUGCaGCCG- -5'
18524 3' -53 NC_004681.1 + 45216 0.68 0.804978
Target:  5'- gUAGaCCUGCgc---GACGGCGUCGGCc -3'
miRNA:   3'- -GUCgGGAUGacuucUUGCUGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 44980 0.67 0.838574
Target:  5'- gAGCCCUGCUGcauccucggccucguGGGCGuCGcccgcuUCGGCa -3'
miRNA:   3'- gUCGGGAUGACuu-------------CUUGCuGC------AGCCG- -5'
18524 3' -53 NC_004681.1 + 40607 0.69 0.74559
Target:  5'- aAGCCU---UGAAGGGCGACGUugaUGGUg -3'
miRNA:   3'- gUCGGGaugACUUCUUGCUGCA---GCCG- -5'
18524 3' -53 NC_004681.1 + 40169 0.68 0.814318
Target:  5'- cCAGCCUgucgauCUGGGu-GCuGGCGUCGGCc -3'
miRNA:   3'- -GUCGGGau----GACUUcuUG-CUGCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.