miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18524 5' -62.5 NC_004681.1 + 67712 1.1 0.000246
Target:  5'- aGGGCCGCUGGCGCUACCGCAUGGCCAa -3'
miRNA:   3'- -CCCGGCGACCGCGAUGGCGUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 6286 0.72 0.16303
Target:  5'- aGGGCCGCgagaucaugGGC-CUGCCGCGgucggaugacccgaaGGCCGa -3'
miRNA:   3'- -CCCGGCGa--------CCGcGAUGGCGUa--------------CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 40481 0.72 0.16684
Target:  5'- cGGCCacGCUGGCGgUGCCGCucuugcUGGCg- -3'
miRNA:   3'- cCCGG--CGACCGCgAUGGCGu-----ACCGgu -5'
18524 5' -62.5 NC_004681.1 + 33373 0.72 0.184751
Target:  5'- cGGCCGCgucGCGCgcGCCGUGUGGCa- -3'
miRNA:   3'- cCCGGCGac-CGCGa-UGGCGUACCGgu -5'
18524 5' -62.5 NC_004681.1 + 14897 0.71 0.19433
Target:  5'- cGGGCCaGCUgGGCGCcaGCCuucaGgAUGGCCAg -3'
miRNA:   3'- -CCCGG-CGA-CCGCGa-UGG----CgUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 24782 0.71 0.213197
Target:  5'- -cGCuCGCUGGCGCcacggaaauucccaUGcCCGCAUgGGCCAa -3'
miRNA:   3'- ccCG-GCGACCGCG--------------AU-GGCGUA-CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 38330 0.71 0.214794
Target:  5'- cGGuGCCuaUGGCGCcGCCGCGggacgucuucGGCCGc -3'
miRNA:   3'- -CC-CGGcgACCGCGaUGGCGUa---------CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 60569 0.7 0.219646
Target:  5'- cGGGCCGCUGGCcgacgaacgugguGCUcgacgaggccGCCGCugcGGCa- -3'
miRNA:   3'- -CCCGGCGACCG-------------CGA----------UGGCGua-CCGgu -5'
18524 5' -62.5 NC_004681.1 + 39209 0.7 0.225703
Target:  5'- cGGUCGCggaaGGUGUUGcCCGCgcagGUGGCCAc -3'
miRNA:   3'- cCCGGCGa---CCGCGAU-GGCG----UACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 37757 0.7 0.231332
Target:  5'- cGGCCGCUGGCGaggccCCGCAgaaGUCGg -3'
miRNA:   3'- cCCGGCGACCGCgau--GGCGUac-CGGU- -5'
18524 5' -62.5 NC_004681.1 + 36369 0.7 0.237078
Target:  5'- cGGGUgGgUGGCGC-ACUGCgaagaccucccaGUGGCCGa -3'
miRNA:   3'- -CCCGgCgACCGCGaUGGCG------------UACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 60172 0.7 0.242944
Target:  5'- aGGCUGCUGGUGCUGagCGCGaGGUg- -3'
miRNA:   3'- cCCGGCGACCGCGAUg-GCGUaCCGgu -5'
18524 5' -62.5 NC_004681.1 + 5925 0.69 0.255655
Target:  5'- gGGGCUGa-GGCGCUucucguGCCGCAguaccagguuggggcGGCCAg -3'
miRNA:   3'- -CCCGGCgaCCGCGA------UGGCGUa--------------CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 52965 0.69 0.261267
Target:  5'- cGGGCaCGCgGGCag-GCCG-AUGGCCAg -3'
miRNA:   3'- -CCCG-GCGaCCGcgaUGGCgUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 9523 0.69 0.261267
Target:  5'- cGGCCuGCUGGUG-UACCGCcccucGGCCu -3'
miRNA:   3'- cCCGG-CGACCGCgAUGGCGua---CCGGu -5'
18524 5' -62.5 NC_004681.1 + 2444 0.69 0.267621
Target:  5'- uGGGCCuuGUUGGCGCgcgGCaCGCAgaagugGGCg- -3'
miRNA:   3'- -CCCGG--CGACCGCGa--UG-GCGUa-----CCGgu -5'
18524 5' -62.5 NC_004681.1 + 42364 0.69 0.267621
Target:  5'- aGGCCGUgaaGGCGCcuuCCGCGggcgGGaCCAg -3'
miRNA:   3'- cCCGGCGa--CCGCGau-GGCGUa---CC-GGU- -5'
18524 5' -62.5 NC_004681.1 + 32337 0.69 0.267621
Target:  5'- cGGGCUagacacgagGCc-GCGCUGCCGCugcgAUGGCCu -3'
miRNA:   3'- -CCCGG---------CGacCGCGAUGGCG----UACCGGu -5'
18524 5' -62.5 NC_004681.1 + 15756 0.69 0.274098
Target:  5'- -cGCCGUUGGCGU--CUGCGUGaGCCu -3'
miRNA:   3'- ccCGGCGACCGCGauGGCGUAC-CGGu -5'
18524 5' -62.5 NC_004681.1 + 3403 0.68 0.294282
Target:  5'- uGGCCGC-GGCGC--CCGCGcGaGCCAc -3'
miRNA:   3'- cCCGGCGaCCGCGauGGCGUaC-CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.