miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18524 5' -62.5 NC_004681.1 + 67712 1.1 0.000246
Target:  5'- aGGGCCGCUGGCGCUACCGCAUGGCCAa -3'
miRNA:   3'- -CCCGGCGACCGCGAUGGCGUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 16026 0.68 0.33046
Target:  5'- cGGCUGCUGGCaagggcgccgccGCUgucACCGCAUccGCCGc -3'
miRNA:   3'- cCCGGCGACCG------------CGA---UGGCGUAc-CGGU- -5'
18524 5' -62.5 NC_004681.1 + 45592 0.67 0.361689
Target:  5'- aGGUgGCcGGUGCcuccuCCGCGUcGGCCAa -3'
miRNA:   3'- cCCGgCGaCCGCGau---GGCGUA-CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 49420 0.67 0.386423
Target:  5'- aGGCCGaCUGGaauCGggACUGCAccGGCCAg -3'
miRNA:   3'- cCCGGC-GACC---GCgaUGGCGUa-CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 30152 0.67 0.386423
Target:  5'- cGGGCUcagGC-GGCGCgGCCGCggaGUGGaCCu -3'
miRNA:   3'- -CCCGG---CGaCCGCGaUGGCG---UACC-GGu -5'
18524 5' -62.5 NC_004681.1 + 15889 0.66 0.394912
Target:  5'- cGGCCGCgUGG-GUcACCGUgaagaucgccGUGGCCGc -3'
miRNA:   3'- cCCGGCG-ACCgCGaUGGCG----------UACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 22279 0.66 0.412248
Target:  5'- uGGCgGCgugGGCGCccugcCCGuCAUGGCgCAg -3'
miRNA:   3'- cCCGgCGa--CCGCGau---GGC-GUACCG-GU- -5'
18524 5' -62.5 NC_004681.1 + 61741 0.66 0.42109
Target:  5'- aGGCCGCccucGCGCgccaccagACCGCGgccgccaucGGCCAg -3'
miRNA:   3'- cCCGGCGac--CGCGa-------UGGCGUa--------CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 70474 0.66 0.439112
Target:  5'- cGGCCGC--GCGUagacgucaGCCGUAUGGUCAc -3'
miRNA:   3'- cCCGGCGacCGCGa-------UGGCGUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 38898 0.68 0.315607
Target:  5'- aGGCCagccuGCUGGCGUgggucaAUC-CAUGGCCAg -3'
miRNA:   3'- cCCGG-----CGACCGCGa-----UGGcGUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 12066 0.68 0.308372
Target:  5'- cGGCCGCaUGGaCGagGCCGaguaCGUGGCCGa -3'
miRNA:   3'- cCCGGCG-ACC-GCgaUGGC----GUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 6286 0.72 0.16303
Target:  5'- aGGGCCGCgagaucaugGGC-CUGCCGCGgucggaugacccgaaGGCCGa -3'
miRNA:   3'- -CCCGGCGa--------CCGcGAUGGCGUa--------------CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 33373 0.72 0.184751
Target:  5'- cGGCCGCgucGCGCgcGCCGUGUGGCa- -3'
miRNA:   3'- cCCGGCGac-CGCGa-UGGCGUACCGgu -5'
18524 5' -62.5 NC_004681.1 + 24782 0.71 0.213197
Target:  5'- -cGCuCGCUGGCGCcacggaaauucccaUGcCCGCAUgGGCCAa -3'
miRNA:   3'- ccCG-GCGACCGCG--------------AU-GGCGUA-CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 60569 0.7 0.219646
Target:  5'- cGGGCCGCUGGCcgacgaacgugguGCUcgacgaggccGCCGCugcGGCa- -3'
miRNA:   3'- -CCCGGCGACCG-------------CGA----------UGGCGua-CCGgu -5'
18524 5' -62.5 NC_004681.1 + 60172 0.7 0.242944
Target:  5'- aGGCUGCUGGUGCUGagCGCGaGGUg- -3'
miRNA:   3'- cCCGGCGACCGCGAUg-GCGUaCCGgu -5'
18524 5' -62.5 NC_004681.1 + 9523 0.69 0.261267
Target:  5'- cGGCCuGCUGGUG-UACCGCcccucGGCCu -3'
miRNA:   3'- cCCGG-CGACCGCgAUGGCGua---CCGGu -5'
18524 5' -62.5 NC_004681.1 + 3403 0.68 0.294282
Target:  5'- uGGCCGC-GGCGC--CCGCGcGaGCCAc -3'
miRNA:   3'- cCCGGCGaCCGCGauGGCGUaC-CGGU- -5'
18524 5' -62.5 NC_004681.1 + 20009 0.68 0.299156
Target:  5'- cGGGCacUUGGCGCUgucgaACCGCggagaccaggacggGUGGCCGc -3'
miRNA:   3'- -CCCGgcGACCGCGA-----UGGCG--------------UACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 9400 0.66 0.44277
Target:  5'- cGGGuuGCcguaGGCGUUGCCGaagaaGuugccgcccauguacUGGCCAu -3'
miRNA:   3'- -CCCggCGa---CCGCGAUGGCg----U---------------ACCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.