miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18524 5' -62.5 NC_004681.1 + 2444 0.69 0.267621
Target:  5'- uGGGCCuuGUUGGCGCgcgGCaCGCAgaagugGGCg- -3'
miRNA:   3'- -CCCGG--CGACCGCGa--UG-GCGUa-----CCGgu -5'
18524 5' -62.5 NC_004681.1 + 3048 0.67 0.361689
Target:  5'- gGGGUccuCGCUGGUGaacucgGCgCGCGUGGCg- -3'
miRNA:   3'- -CCCG---GCGACCGCga----UG-GCGUACCGgu -5'
18524 5' -62.5 NC_004681.1 + 3129 0.68 0.301264
Target:  5'- uGGcGCCGCgGGUGCgggcauUGCCGC-UGGCg- -3'
miRNA:   3'- -CC-CGGCGaCCGCG------AUGGCGuACCGgu -5'
18524 5' -62.5 NC_004681.1 + 3403 0.68 0.294282
Target:  5'- uGGCCGC-GGCGC--CCGCGcGaGCCAc -3'
miRNA:   3'- cCCGGCGaCCGCGauGGCGUaC-CGGU- -5'
18524 5' -62.5 NC_004681.1 + 5371 0.66 0.436381
Target:  5'- -uGCCGCcguagagcgagaauUGGCGCUccaACUGCAUGcCCAc -3'
miRNA:   3'- ccCGGCG--------------ACCGCGA---UGGCGUACcGGU- -5'
18524 5' -62.5 NC_004681.1 + 5925 0.69 0.255655
Target:  5'- gGGGCUGa-GGCGCUucucguGCCGCAguaccagguuggggcGGCCAg -3'
miRNA:   3'- -CCCGGCgaCCGCGA------UGGCGUa--------------CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 6286 0.72 0.16303
Target:  5'- aGGGCCGCgagaucaugGGC-CUGCCGCGgucggaugacccgaaGGCCGa -3'
miRNA:   3'- -CCCGGCGa--------CCGcGAUGGCGUa--------------CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 7462 0.67 0.369811
Target:  5'- cGGCCGCgGGCuuggcgggagGCUucGCCGCGgcggcggGGUCAg -3'
miRNA:   3'- cCCGGCGaCCG----------CGA--UGGCGUa------CCGGU- -5'
18524 5' -62.5 NC_004681.1 + 9400 0.66 0.44277
Target:  5'- cGGGuuGCcguaGGCGUUGCCGaagaaGuugccgcccauguacUGGCCAu -3'
miRNA:   3'- -CCCggCGa---CCGCGAUGGCg----U---------------ACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 9523 0.69 0.261267
Target:  5'- cGGCCuGCUGGUG-UACCGCcccucGGCCu -3'
miRNA:   3'- cCCGG-CGACCGCgAUGGCGua---CCGGu -5'
18524 5' -62.5 NC_004681.1 + 9626 0.68 0.33046
Target:  5'- aGGCCGaggGGCGgUACaccaGCA-GGCCGa -3'
miRNA:   3'- cCCGGCga-CCGCgAUGg---CGUaCCGGU- -5'
18524 5' -62.5 NC_004681.1 + 11960 0.66 0.412248
Target:  5'- cGGuaCGCUGcGCGC-GCCGCGacuGCCAa -3'
miRNA:   3'- -CCcgGCGAC-CGCGaUGGCGUac-CGGU- -5'
18524 5' -62.5 NC_004681.1 + 12066 0.68 0.308372
Target:  5'- cGGCCGCaUGGaCGagGCCGaguaCGUGGCCGa -3'
miRNA:   3'- cCCGGCG-ACC-GCgaUGGC----GUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 14897 0.71 0.19433
Target:  5'- cGGGCCaGCUgGGCGCcaGCCuucaGgAUGGCCAg -3'
miRNA:   3'- -CCCGG-CGA-CCGCGa-UGG----CgUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 15756 0.69 0.274098
Target:  5'- -cGCCGUUGGCGU--CUGCGUGaGCCu -3'
miRNA:   3'- ccCGGCGACCGCGauGGCGUAC-CGGu -5'
18524 5' -62.5 NC_004681.1 + 15889 0.66 0.394912
Target:  5'- cGGCCGCgUGG-GUcACCGUgaagaucgccGUGGCCGc -3'
miRNA:   3'- cCCGGCG-ACCgCGaUGGCG----------UACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 16026 0.68 0.33046
Target:  5'- cGGCUGCUGGCaagggcgccgccGCUgucACCGCAUccGCCGc -3'
miRNA:   3'- cCCGGCGACCG------------CGA---UGGCGUAc-CGGU- -5'
18524 5' -62.5 NC_004681.1 + 16196 0.68 0.32297
Target:  5'- uGGCgGCUGuGCGC-GCCGCgGUGGUg- -3'
miRNA:   3'- cCCGgCGAC-CGCGaUGGCG-UACCGgu -5'
18524 5' -62.5 NC_004681.1 + 16327 0.66 0.412248
Target:  5'- cGGGUCGUUGGgauuucCGCcgAagGCGUGGCCGu -3'
miRNA:   3'- -CCCGGCGACC------GCGa-UggCGUACCGGU- -5'
18524 5' -62.5 NC_004681.1 + 18155 0.68 0.315607
Target:  5'- cGGGacaaucggaagaCCGC-GGCGCUGCCGUGaGGCg- -3'
miRNA:   3'- -CCC------------GGCGaCCGCGAUGGCGUaCCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.