miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18525 3' -54.5 NC_004681.1 + 30378 0.66 0.853653
Target:  5'- uUCAGGUC-ACCAcGGAuCGGUGgUCUcgACg -3'
miRNA:   3'- -GGUCCAGuUGGU-CCU-GCCGUgAGA--UG- -5'
18525 3' -54.5 NC_004681.1 + 32794 0.66 0.836684
Target:  5'- aCCAGGagUCcguCCAGGACGGCGu----- -3'
miRNA:   3'- -GGUCC--AGuu-GGUCCUGCCGUgagaug -5'
18525 3' -54.5 NC_004681.1 + 4664 0.66 0.827884
Target:  5'- aCCAcuGGUCAgcaucgccACCgAGGAUGGUgaaacGCUUUGCg -3'
miRNA:   3'- -GGU--CCAGU--------UGG-UCCUGCCG-----UGAGAUG- -5'
18525 3' -54.5 NC_004681.1 + 19411 0.66 0.827884
Target:  5'- aCGGG-CGACgAGGACgcaGGCG-UCUGCg -3'
miRNA:   3'- gGUCCaGUUGgUCCUG---CCGUgAGAUG- -5'
18525 3' -54.5 NC_004681.1 + 62085 0.66 0.827884
Target:  5'- gCAuGG-CGGCCuccauGGGCGGCAUcCUGCu -3'
miRNA:   3'- gGU-CCaGUUGGu----CCUGCCGUGaGAUG- -5'
18525 3' -54.5 NC_004681.1 + 16662 0.66 0.818885
Target:  5'- -aGGGUCucacugguGCUGGcGACGGCGCUCcgaGCa -3'
miRNA:   3'- ggUCCAGu-------UGGUC-CUGCCGUGAGa--UG- -5'
18525 3' -54.5 NC_004681.1 + 17933 0.66 0.818885
Target:  5'- cCCGGGUUggUgAGGcCGGUGCcUUGCg -3'
miRNA:   3'- -GGUCCAGuuGgUCCuGCCGUGaGAUG- -5'
18525 3' -54.5 NC_004681.1 + 474 0.66 0.813394
Target:  5'- cCCAGGUCuuGACCGcgggcucguccucgcGGAUGGCGCcCaugACg -3'
miRNA:   3'- -GGUCCAG--UUGGU---------------CCUGCCGUGaGa--UG- -5'
18525 3' -54.5 NC_004681.1 + 67070 0.66 0.809697
Target:  5'- uCUGGGUCAACCAGuugcgcgagaaGAuCGGCAacgugggCUACg -3'
miRNA:   3'- -GGUCCAGUUGGUC-----------CU-GCCGUga-----GAUG- -5'
18525 3' -54.5 NC_004681.1 + 31847 0.67 0.790791
Target:  5'- uCUGGGUacuuGAUCGGGuCGGCGC-CUGCc -3'
miRNA:   3'- -GGUCCAg---UUGGUCCuGCCGUGaGAUG- -5'
18525 3' -54.5 NC_004681.1 + 69212 0.67 0.790791
Target:  5'- gCCAGGgcgCGGgCGaGGCGGCGCUUcACa -3'
miRNA:   3'- -GGUCCa--GUUgGUcCUGCCGUGAGaUG- -5'
18525 3' -54.5 NC_004681.1 + 19364 0.67 0.790791
Target:  5'- aCCGGGUCGACCAcacCGGC-CUggGCg -3'
miRNA:   3'- -GGUCCAGUUGGUccuGCCGuGAgaUG- -5'
18525 3' -54.5 NC_004681.1 + 10315 0.67 0.790791
Target:  5'- aCCGGGg-AGCCAGGGCcagguguggccGGUGCUCcACu -3'
miRNA:   3'- -GGUCCagUUGGUCCUG-----------CCGUGAGaUG- -5'
18525 3' -54.5 NC_004681.1 + 22399 0.67 0.781094
Target:  5'- gCuGGUCAccccgGCCGcGGACGGCAaccCUCcGCa -3'
miRNA:   3'- gGuCCAGU-----UGGU-CCUGCCGU---GAGaUG- -5'
18525 3' -54.5 NC_004681.1 + 19259 0.67 0.771248
Target:  5'- gCCAGGUCuucACCuGGACcGCGgUCaACa -3'
miRNA:   3'- -GGUCCAGu--UGGuCCUGcCGUgAGaUG- -5'
18525 3' -54.5 NC_004681.1 + 8557 0.68 0.740921
Target:  5'- cCgGGGUCAGCCGccuUGGCGCUC-ACg -3'
miRNA:   3'- -GgUCCAGUUGGUccuGCCGUGAGaUG- -5'
18525 3' -54.5 NC_004681.1 + 61722 0.68 0.740921
Target:  5'- --uGGUCGccucuuCCAGGGCGGgGCUCa-- -3'
miRNA:   3'- gguCCAGUu-----GGUCCUGCCgUGAGaug -5'
18525 3' -54.5 NC_004681.1 + 18298 0.68 0.730586
Target:  5'- cCCGGGggugcGCCGGGA-GGCGCUCc-- -3'
miRNA:   3'- -GGUCCagu--UGGUCCUgCCGUGAGaug -5'
18525 3' -54.5 NC_004681.1 + 57973 0.68 0.717009
Target:  5'- cCCAGaUCGcccgacgcaugggcAUCAGGGaggaGGCGCUCUACc -3'
miRNA:   3'- -GGUCcAGU--------------UGGUCCUg---CCGUGAGAUG- -5'
18525 3' -54.5 NC_004681.1 + 67520 0.68 0.709641
Target:  5'- uCCGGGUUGGCCuugagccacuGGACGGC-CUUggGCu -3'
miRNA:   3'- -GGUCCAGUUGGu---------CCUGCCGuGAGa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.