miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18525 3' -54.5 NC_004681.1 + 69212 0.67 0.790791
Target:  5'- gCCAGGgcgCGGgCGaGGCGGCGCUUcACa -3'
miRNA:   3'- -GGUCCa--GUUgGUcCUGCCGUGAGaUG- -5'
18525 3' -54.5 NC_004681.1 + 68423 1.12 0.001167
Target:  5'- aCCAGGUCAACCAGGACGGCACUCUACu -3'
miRNA:   3'- -GGUCCAGUUGGUCCUGCCGUGAGAUG- -5'
18525 3' -54.5 NC_004681.1 + 67520 0.68 0.709641
Target:  5'- uCCGGGUUGGCCuugagccacuGGACGGC-CUUggGCu -3'
miRNA:   3'- -GGUCCAGUUGGu---------CCUGCCGuGAGa-UG- -5'
18525 3' -54.5 NC_004681.1 + 67070 0.66 0.809697
Target:  5'- uCUGGGUCAACCAGuugcgcgagaaGAuCGGCAacgugggCUACg -3'
miRNA:   3'- -GGUCCAGUUGGUC-----------CU-GCCGUga-----GAUG- -5'
18525 3' -54.5 NC_004681.1 + 66626 0.69 0.688402
Target:  5'- aCCGGcUCuaucGCuCuGGACGGCGCUCUGg -3'
miRNA:   3'- -GGUCcAGu---UG-GuCCUGCCGUGAGAUg -5'
18525 3' -54.5 NC_004681.1 + 65285 0.7 0.591405
Target:  5'- aCCAGG-CGuCCAGG-UGGCGCUUgGCg -3'
miRNA:   3'- -GGUCCaGUuGGUCCuGCCGUGAGaUG- -5'
18525 3' -54.5 NC_004681.1 + 63905 0.69 0.668031
Target:  5'- cCCAGGUUAugCAGGuucgaguccugucgGGCGCUCg-- -3'
miRNA:   3'- -GGUCCAGUugGUCCug------------CCGUGAGaug -5'
18525 3' -54.5 NC_004681.1 + 62085 0.66 0.827884
Target:  5'- gCAuGG-CGGCCuccauGGGCGGCAUcCUGCu -3'
miRNA:   3'- gGU-CCaGUUGGu----CCUGCCGUGaGAUG- -5'
18525 3' -54.5 NC_004681.1 + 61722 0.68 0.740921
Target:  5'- --uGGUCGccucuuCCAGGGCGGgGCUCa-- -3'
miRNA:   3'- gguCCAGUu-----GGUCCUGCCgUGAGaug -5'
18525 3' -54.5 NC_004681.1 + 60005 0.74 0.382965
Target:  5'- gCGGGUCcucaAGCCcGGugGGCAC-CUGCu -3'
miRNA:   3'- gGUCCAG----UUGGuCCugCCGUGaGAUG- -5'
18525 3' -54.5 NC_004681.1 + 57973 0.68 0.717009
Target:  5'- cCCAGaUCGcccgacgcaugggcAUCAGGGaggaGGCGCUCUACc -3'
miRNA:   3'- -GGUCcAGU--------------UGGUCCUg---CCGUGAGAUG- -5'
18525 3' -54.5 NC_004681.1 + 48748 0.69 0.645381
Target:  5'- uCCuuGGUCcagcaccuCCAGGACGGCGg-CUACa -3'
miRNA:   3'- -GGu-CCAGuu------GGUCCUGCCGUgaGAUG- -5'
18525 3' -54.5 NC_004681.1 + 47469 0.72 0.483797
Target:  5'- aUCAGGUCGccGCguGcGACGGCcacuacaagucgcuGCUCUACa -3'
miRNA:   3'- -GGUCCAGU--UGguC-CUGCCG--------------UGAGAUG- -5'
18525 3' -54.5 NC_004681.1 + 46941 0.69 0.645381
Target:  5'- aUCGGGgu-GCCGGGGCGGUugccGCggggCUGCg -3'
miRNA:   3'- -GGUCCaguUGGUCCUGCCG----UGa---GAUG- -5'
18525 3' -54.5 NC_004681.1 + 40124 0.68 0.697991
Target:  5'- gCCAGGUCGGugaccgcCCGGGACaGGCAggCcGCg -3'
miRNA:   3'- -GGUCCAGUU-------GGUCCUG-CCGUgaGaUG- -5'
18525 3' -54.5 NC_004681.1 + 37297 0.71 0.580675
Target:  5'- gCCGGGUCAGcuCCAGGAUGG-GCUUg-- -3'
miRNA:   3'- -GGUCCAGUU--GGUCCUGCCgUGAGaug -5'
18525 3' -54.5 NC_004681.1 + 32794 0.66 0.836684
Target:  5'- aCCAGGagUCcguCCAGGACGGCGu----- -3'
miRNA:   3'- -GGUCC--AGuu-GGUCCUGCCGUgagaug -5'
18525 3' -54.5 NC_004681.1 + 31847 0.67 0.790791
Target:  5'- uCUGGGUacuuGAUCGGGuCGGCGC-CUGCc -3'
miRNA:   3'- -GGUCCAg---UUGGUCCuGCCGUGaGAUG- -5'
18525 3' -54.5 NC_004681.1 + 30378 0.66 0.853653
Target:  5'- uUCAGGUC-ACCAcGGAuCGGUGgUCUcgACg -3'
miRNA:   3'- -GGUCCAGuUGGU-CCU-GCCGUgAGA--UG- -5'
18525 3' -54.5 NC_004681.1 + 26829 0.69 0.677699
Target:  5'- gCCgAGGUUGGCCGGGGCGG-GCUUa-- -3'
miRNA:   3'- -GG-UCCAGUUGGUCCUGCCgUGAGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.