miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18526 5' -55.2 NC_004681.1 + 37192 0.66 0.811243
Target:  5'- aCAGGGCUGCgcgUGUggaucGGCugGUucugaggccgCUGGg -3'
miRNA:   3'- cGUCCUGAUGa--ACGa----CCGugCG----------GACC- -5'
18526 5' -55.2 NC_004681.1 + 20543 0.66 0.801911
Target:  5'- gGCGGcGACcacCUUGCugucgaUGGuCGCGCCUGa -3'
miRNA:   3'- -CGUC-CUGau-GAACG------ACC-GUGCGGACc -5'
18526 5' -55.2 NC_004681.1 + 68502 0.66 0.801911
Target:  5'- cGCcacuGAaugGCUcGC-GGCACGCCUGGg -3'
miRNA:   3'- -CGuc--CUga-UGAaCGaCCGUGCGGACC- -5'
18526 5' -55.2 NC_004681.1 + 5225 0.66 0.800968
Target:  5'- uGCAGGACUccuACUacuacgcgcccgcUGUgGGCAUGCaguUGGa -3'
miRNA:   3'- -CGUCCUGA---UGA-------------ACGaCCGUGCGg--ACC- -5'
18526 5' -55.2 NC_004681.1 + 48652 0.66 0.799078
Target:  5'- aGCAGGGCUGggUGCUGccguCGCGCUcgaccgugaaguauUGGc -3'
miRNA:   3'- -CGUCCUGAUgaACGACc---GUGCGG--------------ACC- -5'
18526 5' -55.2 NC_004681.1 + 24055 0.66 0.792408
Target:  5'- cCAGGuCgGCgaacgUGUUGGCACGCCcGa -3'
miRNA:   3'- cGUCCuGaUGa----ACGACCGUGCGGaCc -5'
18526 5' -55.2 NC_004681.1 + 29585 0.66 0.792408
Target:  5'- aGguGGGCgGCaacgUGCUGGCcuACGCuCUGc -3'
miRNA:   3'- -CguCCUGaUGa---ACGACCG--UGCG-GACc -5'
18526 5' -55.2 NC_004681.1 + 3109 0.66 0.782744
Target:  5'- cGCAGGACUACcUGaucggaucGCGCGCCc-- -3'
miRNA:   3'- -CGUCCUGAUGaACgac-----CGUGCGGacc -5'
18526 5' -55.2 NC_004681.1 + 11352 0.66 0.782744
Target:  5'- gGCaAGGACguugAUgagGCUGGCGa-CCUGGc -3'
miRNA:   3'- -CG-UCCUGa---UGaa-CGACCGUgcGGACC- -5'
18526 5' -55.2 NC_004681.1 + 69999 0.66 0.772929
Target:  5'- uGCGGGuaGCUAUgcccGCUGGCuuucGCGUCUcGGa -3'
miRNA:   3'- -CGUCC--UGAUGaa--CGACCG----UGCGGA-CC- -5'
18526 5' -55.2 NC_004681.1 + 46909 0.66 0.772929
Target:  5'- cGCGGcGACUGgUUcGCUGGCACuaCCUacGGu -3'
miRNA:   3'- -CGUC-CUGAUgAA-CGACCGUGc-GGA--CC- -5'
18526 5' -55.2 NC_004681.1 + 17288 0.67 0.762975
Target:  5'- cCGGaGACgACgcccUGCUGGCGCGCgUGc -3'
miRNA:   3'- cGUC-CUGaUGa---ACGACCGUGCGgACc -5'
18526 5' -55.2 NC_004681.1 + 8226 0.67 0.75289
Target:  5'- --uGGACUuuGCgaGCUGGCgGC-CCUGGg -3'
miRNA:   3'- cguCCUGA--UGaaCGACCG-UGcGGACC- -5'
18526 5' -55.2 NC_004681.1 + 3151 0.67 0.75289
Target:  5'- cGCAGGACUGCcacCaGGCccuugGCGCCgcgGGu -3'
miRNA:   3'- -CGUCCUGAUGaacGaCCG-----UGCGGa--CC- -5'
18526 5' -55.2 NC_004681.1 + 22742 0.67 0.742687
Target:  5'- cGUAGGcgauCUGCUUGCgcgcGGCGCuGCCcgcGGu -3'
miRNA:   3'- -CGUCCu---GAUGAACGa---CCGUG-CGGa--CC- -5'
18526 5' -55.2 NC_004681.1 + 13884 0.67 0.742687
Target:  5'- cCGGGACgacaGCUUGggGGCgccguccuuGCGCUUGGu -3'
miRNA:   3'- cGUCCUGa---UGAACgaCCG---------UGCGGACC- -5'
18526 5' -55.2 NC_004681.1 + 39507 0.67 0.72197
Target:  5'- gGCGGGACUcauggcccaaGCggGCUGGCAauCCcGGc -3'
miRNA:   3'- -CGUCCUGA----------UGaaCGACCGUgcGGaCC- -5'
18526 5' -55.2 NC_004681.1 + 53355 0.67 0.711476
Target:  5'- -gAGGGCUAUacccUUGGC-CGCCUGGu -3'
miRNA:   3'- cgUCCUGAUGaac-GACCGuGCGGACC- -5'
18526 5' -55.2 NC_004681.1 + 14489 0.68 0.700908
Target:  5'- aGCAGGGCgcGCUgguggccggUGCUGGCGCgaGCaaGGu -3'
miRNA:   3'- -CGUCCUGa-UGA---------ACGACCGUG--CGgaCC- -5'
18526 5' -55.2 NC_004681.1 + 47486 0.68 0.700908
Target:  5'- cGCAGGACcGCgucGCcgUGGCGCGUUggcGGg -3'
miRNA:   3'- -CGUCCUGaUGaa-CG--ACCGUGCGGa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.